3300000345: Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - T=80-84

Overview

Basic Information

• IMG/M Taxon OID: 3300000345
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0054574 | Ga0026524
• Sample Name: Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - T=80-84
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49094763
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1
All Organisms → cellular organisms → Bacteria	1
Not Available	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.5340836
  • Long. (^o): -110.7978895
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021443	Metagenome / Metatranscriptome	219	Y
F043237	Metagenome / Metatranscriptome	156	Y
F073601	Metagenome / Metatranscriptome	120	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
OctSS_8084CDRAFT_1007325	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1341
OctSS_8084CDRAFT_1007671	All Organisms → cellular organisms → Bacteria	1295
OctSS_8084CDRAFT_1012988	Not Available	877
OctSS_8084CDRAFT_1013262	Not Available	863
OctSS_8084CDRAFT_1014857	Not Available	789
OctSS_8084CDRAFT_1017629	Not Available	686
OctSS_8084CDRAFT_1023040	Not Available	549

Sequences

Scaffold ID	Protein ID	Family	Sequence
OctSS_8084CDRAFT_1007325	OctSS_8084CDRAFT_10073252	F043237	MELERTARYIAQLSSRGYKYAVVGKLARYDKKIVKKLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLASKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLKVIERASSLKYPNHKLYTAKVNEALRNLYSILAYTYNDRERLRAIKRKVKHLFVEALKKNYGIEPKKAMEDYRRFVVKFSDVLKKKQRANSSTS*
OctSS_8084CDRAFT_1007671	OctSS_8084CDRAFT_10076713	F073601	LVGAGCPLPGVSLALGRAMLQAKATCLVMALPAKGREDQRMFGRLRFAWRCAIKIIACGNIIRALPVEQKALAGMGILRQQG*
OctSS_8084CDRAFT_1012988	OctSS_8084CDRAFT_10129882	F021443	MKCLLNNEKLSFIFRNTLVTCCNYGDNYYQINGILPFAVTDLAFKIIKQQKRKSIILKKRKPIVHLLNYIDILNSNFNSKKFDIDFFLKNKHKTQLIYNLYLYRNLHRTGYYENIYKDGLKVIERKNLCIIRLEDDFPSVIQPKNLNLAVMLMHILQKEEIDMLEGNGIVFYYVFLM*
OctSS_8084CDRAFT_1013262	OctSS_8084CDRAFT_10132621	F043237	MDLEKTARYIAQLSRHGYKYAIVGKLVRYDREKVKRIEFQGFVFYLCRLPSKKEVVSYCLPRSEGPFRVYCLSSKPLEFPNAPLKLYYDEKTQRLRLLAQRSFINDCLNAIEKASEVKYPSPKLYLAHINRVLHQLYAILAHTYNDKERLRAIKRKVKHWVVEALKNQYGLRPKDAMTDYHRYVLKFSDVLRKKRQKAHKR*
OctSS_8084CDRAFT_1014857	OctSS_8084CDRAFT_10148571	F021443	MKYLLNDEKLTFAFGFFNVTCSNYDYNCSYYQINGILPFAVINLALEIAKQQKRKSIISKKRKPIIHLLNYIDILNFNFNSHKFEITLPLRNDYNRQLTRNLYLYRRSHHRRYYEDYYGDSIKVIESKNLCIIRLEYSFASIIQPKNSSLATVLMHILEKDEIDTIDASGIIYYCVFLM*
OctSS_8084CDRAFT_1017629	OctSS_8084CDRAFT_10176291	F021443	MKYLLNDEKLTFVFGYFYVTCNNYDYSCYQNNGILSFAVMDLALKIIKQQKRKSIILKKRKPIIHLLNYIDTLNFNNNKFDITLPSKNNYKTQLIYNLYSYRNSHLRRYYEGFYKDSLKVIERENLCIIRPEYDYASRIQPKNLSLVTMLMHILEKEEIDMIDASGIIFYCVFLM*
OctSS_8084CDRAFT_1023040	OctSS_8084CDRAFT_10230401	F021443	MKYLLNSEKLTFVFRSSYVTCYNYGYGYYQNDGILSFAVMDLALKIIKQQKRKSIILKKRKPIIHLLNYVDTLNSNFNSNKFDIILSLKNNYKTQLIYNLYSYRNSHLRRYYEGFYEDSLKVIERENLCIIRLEYDYAYSIQPKNLNLAVMLMHILQKEEIDMMIDASGIIFY