Sample 3300000290

Basic Information
IMG/M Taxon OID	3300000290 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045762 \| Gp0053767 \| Ga0010788
Sample Name	Human fecal microbial communities from Cork, Ireland - EM291
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI), Macrogen
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300000290 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0045762 | Gp0053767 | Ga0010788

Sample Name

Human fecal microbial communities from Cork, Ireland - EM291

Sequencing Status

Permanent Draft

Sequencing Center

Beijing Genomics Institute (BGI), Macrogen

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	79724308
Sequencing Scaffolds	19
Novel Protein Genes	21
Associated Families	19

Dataset Contents

Total Genome Size

79724308

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	7
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1
All Organisms → cellular organisms → Bacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Ecosystem Assignment (GOLD)

Name

Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal distal gut

Location Information
Location	Cork, Ireland
Coordinates	Lat. (^o)	51.907	Long. (^o)	-8.472	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Cork, Ireland

Coordinates

Lat. (^o)

51.907

Long. (^o)

-8.472

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F076653	Metagenome	118	N
F078005	Metagenome	117	N
F080673	Metagenome	115	N
F081354	Metagenome	114	Y
F082715	Metagenome / Metatranscriptome	113	N
F083451	Metagenome	113	N

Scaffold	Taxonomy	Length	IMG/M Link
EM291_1001352	Not Available	1113	Open in IMG/M
EM291_1001358	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6604	Open in IMG/M
EM291_1002063	Not Available	8375	Open in IMG/M
EM291_1002429	Not Available	10036	Open in IMG/M
EM291_1002460	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	11610	Open in IMG/M
EM291_1002675	All Organisms → Viruses → Predicted Viral	3386	Open in IMG/M
EM291_1003040	Not Available	1263	Open in IMG/M
EM291_1004179	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1307	Open in IMG/M
EM291_1004497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1945	Open in IMG/M
EM291_1005260	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1931	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

EM291_1001352

Not Available

1113

6604

Not Available

8375

Open in IMG/M

EM291_1002429

Not Available

10036

11610

All Organisms → Viruses → Predicted Viral

3386

Open in IMG/M

EM291_1003040

Not Available

1263

1307

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1945

Open in IMG/M

EM291_1005260

1931

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM291_1000874	EM291_10008741	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFNLNENELYRYRMDKDNVASFK*
EM291_1001352	EM291_10013522	F089590	MLDKIGALWNIAIAYGTSCWAYFQPVHHLLEVLLVVLLANFIARLIQSARRWKVRRSRKRRFSLYRWFREVRLVGILKEFFLSCFIVMTLCVIYKTLSIEEDDASAILVVTKYGVYAALVAYVMLFLNTIGEAFPDTYIVKVFKSIFSRVNILKLFGSAKSLPDDAFDDIKKIADDEVKDKS*
EM291_1001358	EM291_100135813	F083452	MSGRIKIKPKDKDKRPKIDVFKVIENRFKNMNELRDLIDIDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIEMYIKK*
EM291_1001358	EM291_10013589	F102167	MDINQIKTYLPSGWDVVDLIDHGIIDLDIMNGKMIGEYVAVLMIKSYDKITESHNLTTFSFHDKDMGELRRLVSNAIMAVGLRNNPLTGDGNTAIK*
EM291_1002063	EM291_10020633	F098313	MREQEFDFVVYPLKLIITVGLDYETLCNRFENMEPDHKGEWGDKDDMDKEASFVNLVRDRDDDGKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD*
EM291_1002429	EM291_10024292	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLICEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKFI*
EM291_1002460	EM291_100246018	F078005	MKKSEFVKALEKIIDMVKTEDDGFEYGGKVIFYKEDDDNYEISVKNIEMDLTVEANTMASMDDRTFACLMSEVYKQKFTKAIMMSEDEDDEDN*
EM291_1002675	EM291_10026753	F076653	MTLSDKYFGWKDIFFDRFVHCCNEKSGQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFERMGVKMKYNAYYCYAATSGIWYDKGFKRRLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK*
EM291_1003040	EM291_10030401	F093883	MIIMRNMEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDIIKNNINSI*
EM291_1004179	EM291_10041791	F080673	MNEIELLRLQDEALFYLRDNITKDEAYYVLTTDEDMIEILIADKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLAASYIGVDMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRIDDNKEKIDFMFVYFM
EM291_1004497	EM291_10044972	F082715	MMKFMKRALSLLISAMLLLGCFALAEETPLLPIAIVSYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGNDVVSTVNLDARDATILLVEPDEEGNG*
EM291_1005260	EM291_10052603	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEPRILCDNGKGNSPMVVMIEDDKADNYIILRYNETGRRNINGQSGFDLMLSIKEREPELWVVVISYIDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSSVSYYVDKLEEDKCFDELCEKIRVKRDRIYNMEIISLSDDEATV*
EM291_1005930	EM291_10059301	F050794	MNVSLINKINDFNNVQLDSFLHRKIMQDLRIQRVKVLMMLYTSHYFVNNRQRQLFDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEYNGIIKKLMKEAEKLELDTDAIKEMMRDLLNELKDDIDLNILIFDVTQLLIKYNLFRLDVITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVEMIETRYNRFVW*
EM291_1008748	EM291_10087482	F101193	MARKCTEYHYFQHTYWDVMARYNWMRCPYCGKLCKPSRFKAATVLVPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPHYIYVRFFMPYETLSEDETRKFRDLQEH*
EM291_1010316	EM291_10103161	F057001	QVPRARANLMTSKDINKVQNEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKDNDIKVDKAVIPALVALAKDKEAVIQLCKEILPRVNDTFCAYKEVEREYYDKQDQANNNKLPSDKVNDIAVFGDTHKRFGYCEPIAYNDTGSVPYYEVFNGSDKRITKVAIPIKRYTYNLIAKCITYYLTHPKNGK*
EM291_1012467	EM291_10124671	F058555	RITCFVLMKLVYSQQKKIPMGTKIRFLHIMKSNFDKILTERYTPRNIQAKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRRMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNT
EM291_1013382	EM291_10133821	F058555	PNNLFRIDETCIFAAKKKKIMETKVTLLHKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVVAYLTIINVQKHVFLRNRMREGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALPDIMIYSYKAKKNEDTKDIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVKILSKIIFRARTRNVHHIYKITKRKTVKFNVSYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGIVNT
EM291_1019724	EM291_10197244	F081354	SSLISNLQSAAPFLSAKRALDLVRENQQSSAHNFVKDFSSIFLKSSRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNTLRRLAFLPFHL*
EM291_1023715	EM291_10237151	F057001	QVPRARANLMTSKDINKVQSEVKKASEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKAVVPSLVALARDKEVVIQLCKDILPRVDETFCAYKEIERVYLDKQDQDRNTKLSEDKVADMAITGKAHKRFGYNEPIEYEGGVYYEVFNGSDKRIVKCAVPIKRYTFNLIAKCVTYYLTHLKNER*
EM291_1029437	EM291_10294372	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQELRI*
EM291_1031099	EM291_10310992	F083451	MDKNEREKQVLDLLMSRKDIRKLVEKSNKCYSKMDFVGAMKYRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM*

Showing 1 to 21 of 21 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000290: Human fecal microbial communities from Cork, Ireland - EM291

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences