3300000286: Human fecal microbial communities from Cork, Ireland - EM268

Overview

Basic Information

• IMG/M Taxon OID: 3300000286
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0053763 | Ga0011195
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM268
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 106092834
• Sequencing Scaffolds: 21
• Novel Protein Genes: 21
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → Pseudoflavonifractor capillosus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F032286	Metagenome / Metatranscriptome	180	Y
F044554	Metagenome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F055715	Metagenome	138	N
F056682	Metagenome	137	Y
F059106	Metagenome	134	N
F067845	Metagenome	125	N
F073656	Metagenome	120	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM268_1001772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1184
EM268_1004706	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1716
EM268_1005172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3620
EM268_1006982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1796
EM268_1008458	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	9827
EM268_1014533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1195
EM268_1015098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	8429
EM268_1018565	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5769
EM268_1018917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → Pseudoflavonifractor capillosus	6221
EM268_1022758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	589

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM268_1001772	EM268_10017722	F026489	LTPKENQKSASDFDALEPRKRGCTPLLTPKQWATPEKTEDSRLFGVKIF*
EM268_1004706	EM268_10047063	F105374	MKKRVALLVALCIWKVVAAQTPYGEMPERFWPDTLPCRLGGGVCFGMNGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
EM268_1005172	EM268_10051723	F087336	MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIRLAEQRQVAFLEIAFQILPLKSKQKKSPPRGKLSKCSFRK*
EM268_1006982	EM268_10069821	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGIAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGYTGDLNKFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAVFIDYNGTAYVVAVFR*
EM268_1008458	EM268_10084586	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELIRLKLQPRHVVANDEAYYAVMKGVSLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY*
EM268_1014533	EM268_10145333	F088921	LGATIRLYKIWAGENHFLCSEKSKSTVFDLDRETKKRKYAKGTCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRDKMRSK*
EM268_1015098	EM268_10150984	F059106	MHVIAWKIRAILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV*
EM268_1018565	EM268_10185654	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIHTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
EM268_1018917	EM268_10189179	F029444	MEVSEQLTGFELEDLMSWTVSALRRPFREDFSLEKSGIIAEKGAQIFGRRFVGFDGPKKAAPFFNF*
EM268_1022758	EM268_10227581	F081354	NQQSSAHNFVKDFSSFFPESRRRSPLKKGAVATIPLEYGKAEVQTLFEPLQATISSMELPKNFENKKLPNTLRRLAFFPFHL*
EM268_1023082	EM268_10230821	F044554	SASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFDQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL*
EM268_1025812	EM268_10258123	F092227	MNEQKRKRMLRIACLLLAGVFVLSLLGSIFMMLLF*
EM268_1048564	EM268_10485642	F088920	VSANLHHYPAFWAGLILHLILHFSQKVAIFVPKRAISLLFVPKLFFAGLSVLFPQTSPKISGQTSLYQPWLSPYCLFKD*
EM268_1048806	EM268_10488065	F056682	MKTQSRAGKAANQPIRQGEIYSASFGAFPSKNRSTFPIQKLGKIYENQEVL*
EM268_1050023	EM268_105002378	F055715	MNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN*
EM268_1052874	EM268_105287410	F032286	MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADYRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRC
EM268_1056909	EM268_10569098	F055715	LTKADEFDKINELLIERTAKKFERASKNRLKKFLTNEKLCDKINELIRVGTAEILDN*
EM268_1058511	EM268_10585112	F088920	VSARPHYYPAFWVGVILHLILHFSKKAVIFALKRAILLLFIPTLFFAGLSVFSPQTSPKISGQTSLYQP
EM268_1061218	EM268_10612185	F047125	MDVALLLVVLGVMLSGFRAADALDHMRKEIIRQEGKRRGWWS*
EM268_1064275	EM268_106427510	F081453	AGDNIIEKHISANPVCRTNIRAPELAVKGAPGRKCVQ*
EM268_1066281	EM268_10662814	F081453	MSPFFLWIGENIIEKYISANPVCGTNIKEPELAVKGTPQKQLRIP*