NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300000278

3300000278: Human fecal microbial communities from Cork, Ireland - EM209



Overview

Basic Information
IMG/M Taxon OID3300000278 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0045762 | Gp0054127 | Ga0011194
Sample NameHuman fecal microbial communities from Cork, Ireland - EM209
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI), Macrogen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size129107158
Sequencing Scaffolds21
Novel Protein Genes21
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus1
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationCork, Ireland
CoordinatesLat. (o)51.907Long. (o)-8.472Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F026489Metagenome197N
F039198Metagenome164Y
F056309Metagenome137N
F059106Metagenome134N
F066905Metagenome126Y
F068855Metagenome124N
F072366Metagenome121N
F074964Metagenome119N
F078822Metagenome116N
F082887Metagenome / Metatranscriptome113Y
F088914Metagenome109N
F089054Metagenome109N
F090484Metagenome108N
F090514Metagenome108N
F098313Metagenome104N
F099406Metagenome103N
F101193Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
EM209_1000474All Organisms → cellular organisms → Bacteria19270Open in IMG/M
EM209_1002197All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus2175Open in IMG/M
EM209_1003348All Organisms → cellular organisms → Bacteria6316Open in IMG/M
EM209_1005055Not Available5413Open in IMG/M
EM209_1005733All Organisms → cellular organisms → Bacteria12845Open in IMG/M
EM209_1008505Not Available1370Open in IMG/M
EM209_1016408All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae4817Open in IMG/M
EM209_1020839Not Available610Open in IMG/M
EM209_1025398All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2554Open in IMG/M
EM209_1027068All Organisms → cellular organisms → Bacteria4836Open in IMG/M
EM209_1032393All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1583548Open in IMG/M
EM209_1047592All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1913Open in IMG/M
EM209_1049772All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii526Open in IMG/M
EM209_1051159All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales919Open in IMG/M
EM209_1051885All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2355Open in IMG/M
EM209_1069384All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis1143Open in IMG/M
EM209_1069507All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6282Open in IMG/M
EM209_1069637All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales538Open in IMG/M
EM209_1080004All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74862Open in IMG/M
EM209_1082647All Organisms → cellular organisms → Bacteria2638Open in IMG/M
EM209_1091305All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium2890Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
EM209_1000474EM209_10004743F082887MEKIKTIAKYTINVLAIISALVTGINAVEGITIPYAIQIVQVIAVVQGVISTYLLGQKAISNREKK*
EM209_1002197EM209_10021973F074964MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGSDLKAVCKSLEIPLEYATKVAALAKDKKRLVTVCNQMLPKVGDTFIKFTLYSKVYKDNKVDKEKGIEAKAADWCADNVVYGSEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
EM209_1003348EM209_10033485F090484MKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKEEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWEGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGLADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVENDKELDGESVFKDIPLEELSFYNDTYLYPSSQYSSL*
EM209_1005055EM209_10050552F099406MAEVGYNSKFEGLEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDNVASTETKNVYNEYILVTEDGGGKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDEGSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDNVVVPKNSFIELSIWYINDKLVIRVGEQA*
EM209_1005733EM209_10057334F013656MEKKIYKEANNFETETNINVLYKEQIISVYTNKVDLQRKLNKVLGKPTREYKIKRSISGSVWEIPFTDKVKIRNLMLKCNIFEL*
EM209_1008505EM209_10085052F082887MEKLKKIAKYTTNILAIISALVAGINAVDGITIPYAIQIVQIIAVIQGVIGTYLLGQKVVTNKEDK*
EM209_1016408EM209_10164084F013656MKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKTKIQKIILKANIYDM*
EM209_1020839EM209_10208391F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENRKNPGKFIVFSAWYAAKALEMDVK*
EM209_1025398EM209_10253982F039198MKLTIAEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVGLNRNVC*
EM209_1027068EM209_10270684F098313MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSKASFLNLVRDKGDDRAFKLLWNFQSENKMTMRNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEN*
EM209_1032393EM209_10323936F068855VPTVEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGTVW*
EM209_1047592EM209_10475925F072366MLDILTIKADVYQLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFEEAKERYPNSLLFEFIPHAAQLDYVWFYRLTDEQQLQIRLEVGEWNLQKN
EM209_1049772EM209_10497721F090514MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVPPRLTGANWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLA*
EM209_1051159EM209_10511592F039198MQITNTEIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVSGKKNYPEILEKIITKQVELDKNVC*
EM209_1051885EM209_10518851F026489SLLVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF*
EM209_1069384EM209_10693843F059106VILLQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV*
EM209_1069507EM209_106950714F066905GCGRNNGCGCLGNLFGGCGCGDSSILFFIIIFLLLFCNCGGNR*
EM209_1069637EM209_10696372F056309LSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD*
EM209_1080004EM209_10800043F078822LFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
EM209_1082647EM209_10826475F089054MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREILQIPLSDITIIDIISLP*
EM209_1091305EM209_10913055F101193MARKCTEYHYFQHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLMPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPHYIYVRFFMPYETLSEDETRKFRDLQEH*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.