3300000269: Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 7, Mississippi Headwaters

Overview

Basic Information

• IMG/M Taxon OID: 3300000269
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0054941 | Gp0053776 | Ga0011189
• Sample Name: Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 7, Mississippi Headwaters
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Minnesota
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 183070581
• Sequencing Scaffolds: 24
• Novel Protein Genes: 26
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
Not Available	7
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Lotic Microbial Communities From Mississippi River At Two Locations In The State Of Minnesota
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Mississippi River At Two Locations In The State Of Minnesota

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: In downtown Hastings
• Coordinates
  • Lat. (^o): 44.745767
  • Long. (^o): -92.85015
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000331	Metagenome / Metatranscriptome	1285	Y
F000714	Metagenome / Metatranscriptome	924	Y
F002996	Metagenome / Metatranscriptome	514	Y
F002997	Metagenome / Metatranscriptome	514	Y
F004345	Metagenome / Metatranscriptome	442	Y
F009197	Metagenome / Metatranscriptome	321	Y
F009748	Metagenome / Metatranscriptome	313	Y
F014107	Metagenome / Metatranscriptome	265	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
M3P_1001924	All Organisms → Viruses → Predicted Viral	2177
M3P_1003236	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1818
M3P_1003324	All Organisms → Viruses → Predicted Viral	1799
M3P_1005631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1473
M3P_1008604	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1249
M3P_1010348	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1160
M3P_1014071	All Organisms → cellular organisms → Bacteria	1026
M3P_1014701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax	1008
M3P_1017915	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	930
M3P_1019953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	888

Sequences

Scaffold ID	Protein ID	Family	Sequence
M3P_1001924	M3P_10019243	F067728	MARIEKPTVTAFKVQLTEYERGWGSKPWDTLYFDNEAEAKQYAIDYNKEHNTAASAPDWYVRADYAGKVS*
M3P_1003236	M3P_10032361	F078007	MATKKAFKPCEGCPTPAKCKAAGKCMAKEGKGGKDALVIMVGVGKPMKAKKK*
M3P_1003324	M3P_10033241	F004345	KEQHMNIEQVIVAATGIGYLVVGVLQWSKGELSNGMIWTGYAFAQIGLWLNIK*
M3P_1005631	M3P_10056313	F069701	VRVLFQLTKPTPKTCARSSEVLDQQIDGTARQQQWQSQIHKHPPHHPQSQVGLFQTMSHHGLILFALAVGFEHVEILEA*
M3P_1008604	M3P_10086042	F092060	MRLITKKNGIEIWAQFDQSAQVYELFFDNEGQTYTGWAVDSIKDAQIASVFIIQEQLS*
M3P_1010348	M3P_10103485	F036693	MKTQYNKPKNLVAKDLRTPKYRMRVVDSKIAFTRKPKHKKDLYEQP*
M3P_1014071	M3P_10140713	F051875	SKFSPIPIYLKNYARQLLSFYSISQVASTLSVSRSFLYNIQKDQNFSLDRKNQQTSGTESLNFIPFNFADPNHPQKNQLINPAPPLNFTCEMIKPNGIRLIIHTSDPTSIINTFLCSN*
M3P_1014701	M3P_10147011	F070024	GSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
M3P_1017915	M3P_10179152	F002997	MAIARFENININNLTFGKSDFGEQSTTQTLWFATRARVAAVANSLKIADKYRLYQDMTTFTLNYTRNMKTIMDSQDLYSITWRGKDWRIDNVRESDDRMTVLFTCYRSDPVTAV*
M3P_1019953	M3P_10199531	F079618	VAFFFMMRCIQFIQTYSGNLSTSFDSSELLAVQALCHQLGSQNALLVQIAWLQISSFAQYSGHEFRWTSLLWI*
M3P_1027538	M3P_10275382	F035740	MKRVLLALSLLISTLVITPEAVAAKRPCSALKTDIQQMLDAKYTGSEADAPQEYARRVVKAYQMGFVNKNCLTSKEYNGLLTGVTQLRDDCSKARLDKSSWADVAKRCNIYKGLYKYVKVAP*
M3P_1029994	M3P_10299941	F053096	MTKYTGPAKPIHTHVELISDRAERIIFLLFAIFIAVYLYLE*
M3P_1031838	M3P_10318382	F009748	VDATPFSAVGTLLRVGDVQRDIKSTSNDTSVSLTGIDTAMLGFVLGNTVKGSYIQMWHGFFDTNGALITTGGTGGLYQFFSGYITSFSIQENWMEEARSFVGTIQIGASSTQLTLQNTDAGRYTNDDSWQFFNPGDTSMNRVSFIETIAYQFGKPE*
M3P_1039096	M3P_10390961	F000237	LMVLHYFTP*YYLYLVKLHALFCHES*DSDSGENVYEDKSGSYVS*FYDAFLKEIQDA*Y*TSLVFVYFFMHHFNGGPVNYFFFER*NISEMDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FILLAALPVIYNLYNSNNNYFSVIPMQSSKLQSFCFMIFMLSMYCTASMLPCGRYYYAPEGGYVGNP*VKFSYQYCYLYLG*IVHHLDLIEHHCF
M3P_1047963	M3P_10479631	F002996	QFSAKSKNTRSDHAVVPDLSDSSGLYVKNKTIRVLLDSGSSGDLLFLKKGSSKRISVVKRDVPQSWGTSNGTFNTNKVGDIEISFVEYSASKKVRLQPDIVEYSPGEQAPMYDLIIGKQTMHDLGVVLDFQEKTITIDEILLPMRNIVNLQLKPRITRALRENSCFAQEPISTRNATKRVVEILDAKYEKADLPAIIRENCSHLTA
M3P_1052822	M3P_10528221	F072024	STSQNCGISYFIFDDIASLAGSADAQNVDPDILKEICKGLKDENPYCADLRFLGVEARARAEGITVIPRMVDQVQHFDVCSVVNNRQTGEMKLQVRTHTNSVSDVNMDSEKVEGLCFPLLFPHGEPGYTNASKSGMSPDEYAMSRLMMPEKIGRDFMTARAQYAPVECVDSRTGQAFAPTEDQSEIEEHQVQGASIFP
M3P_1053630	M3P_10536301	F000714	VTYKVIKGYSDPEFTTSKVTSLEWDLHNGRQSQKRVGLLESNINTVKNIISEAYADSDDQDTLRSIAEALSIELTRTVEFTATIEVSGTIDLNLLEDYDFETEITDNLYVDSQSGNIEIGDTEICYVREA*
M3P_1053630	M3P_10536302	F000311	MYFELTAPSQVAFARATWEAEMIGLDPMTIAPLTFNIGTGSIEKVSRIRDKYNLVESYTSDYEPTG
M3P_1053911	M3P_10539111	F014107	MSLNTILSIAESVTINDHRFVGQTVSRNQKILTSEIITVVPFQFTLRPMNYLLYSQSRSILNALRIPDKALEQYLNFGSTGWLNYIKYQGDMTSAQIAACRWQTSSANKILVLGSLPSISSGSYLFRIGDFVQVDRYTYIVTADVLRGAGATVNVPVHRNLIATLA
M3P_1054270	M3P_10542701	F054558	NQVLQVALAYLRTELGFTGSTSSVDSNFVGHSADGKSKHTDGQVWGSLNWPRRLAIDVSVVNPTAVSHSGAGACGESFLNPNAGTRAAEETKTKKYKRLCEQRGMDFVPIVFTTSGGMGEQFQRRYWNPHWIRVAEEDEAMKIGPWVARKRKAFWEARFAVAVANCNASMISRSQHITD*
M3P_1060877	M3P_10608771	F000331	ADFLNDAAWAVRSTYHTVLKASPGAAIFGRDMLFDVPFLADWNKVGDYRQRQTDRNTARENKTRVEWDYAVGDKVLVRKEGILRKSESKYEKEPWTVSQVHTNGTIRIQRGTKSERLNIRRVTPFFEEITS*
M3P_1064861	M3P_10648611	F060965	GILTPAIRAIRYSSINNVLTLALFMTRLGANYTNDALALDDLAVTADPLH*
M3P_1072345	M3P_10723451	F100394	MKIYLNGTANLGDFLNGLPVMSGISKSYGKYDLIIKHEMKKFKGLKEFLMYQDIFSSVEFDDDLFFSGAINMSSWPMREDKNDPNRPI
M3P_1073806	M3P_10738061	F047562	MPAVCPGSPLSDASCATPDKTRLHRGSPALSAPYLVFAKCLLVSSLLAVSGCVTNESAPVASDDVIGDYDNACLPEAVMMAQALRRHGIKARVLIMSGDGWSHAVTAYQYPTEKGRIWCWDSDEQSVPVSARWSDSE
M3P_1075246	M3P_10752461	F009197	VCDPVSPVMVTVDPAARSKSAVSATVNVLVAPDPGVLCRIDFRLKLGTTTLSGSVPLATPYSAAPSFVIAADAIEPTLLPPPSLISADTLTAGDACDEFPFVKLNVTSHAVPDAFTEPAAVNTSCPDACVHVPLVPSRPDVEDTLKLALSSVCDPVSPVMVTVDPAARSK
M3P_1078169	M3P_10781691	F019325	MTQLNETLFSTIVHDFHNGGVKSSYGLSAYDRKAMVKYLISSPACYCIDCVCEATHTA*