3300000230: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- GS10_10

Overview

Basic Information

• IMG/M Taxon OID: 3300000230
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063446 | Gp0053386 | Ga0026214
• Sample Name: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- GS10_10
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 581077747
• Sequencing Scaffolds: 44
• Novel Protein Genes: 46
• Associated Families: 30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	18
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → Viruses → Predicted Viral	4
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → Roseiflexus castenholzii	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Pustulibacterium → Pustulibacterium marinum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin302	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → aquifer → biofilm material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Grotta Sulfurea, Talus Pool, Frasassi Caves, Italy
• Coordinates
  • Lat. (^o): 43.383333
  • Long. (^o): 12.95
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002525	Metagenome / Metatranscriptome	552	Y
F002779	Metagenome / Metatranscriptome	530	Y
F007365	Metagenome / Metatranscriptome	352	Y
F011397	Metagenome / Metatranscriptome	291	Y
F017295	Metagenome / Metatranscriptome	241	Y
F020177	Metagenome / Metatranscriptome	225	Y
F025295	Metagenome / Metatranscriptome	202	Y
F026554	Metagenome / Metatranscriptome	197	Y
F026883	Metagenome / Metatranscriptome	196	Y
F030433	Metagenome / Metatranscriptome	185	Y
F031503	Metagenome / Metatranscriptome	182	Y
F043393	Metagenome	156	Y
F049638	Metagenome	146	Y
F050966	Metagenome / Metatranscriptome	144	Y
F051137	Metagenome	144	Y
F057876	Metagenome / Metatranscriptome	135	Y
F061835	Metagenome / Metatranscriptome	131	Y
F064659	Metagenome	128	Y
F065251	Metagenome / Metatranscriptome	128	Y
F067652	Metagenome / Metatranscriptome	125	Y
F079376	Metagenome / Metatranscriptome	116	Y
F081921	Metagenome / Metatranscriptome	114	Y
F084884	Metagenome / Metatranscriptome	112	Y
F085105	Metagenome	111	Y
F088949	Metagenome / Metatranscriptome	109	Y
F092108	Metagenome / Metatranscriptome	107	Y
F093840	Metagenome	106	Y
F095532	Metagenome / Metatranscriptome	105	N
F096680	Metagenome / Metatranscriptome	104	Y
F104554	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
TB_GS10_10DRAFT_10000151	Not Available	31812
TB_GS10_10DRAFT_10000228	Not Available	28475
TB_GS10_10DRAFT_10000522	Not Available	21315
TB_GS10_10DRAFT_10001356	Not Available	14377
TB_GS10_10DRAFT_10004301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila	8601
TB_GS10_10DRAFT_10004923	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	8002
TB_GS10_10DRAFT_10030251	Not Available	2679
TB_GS10_10DRAFT_10035569	All Organisms → cellular organisms → Bacteria	2410
TB_GS10_10DRAFT_10038962	All Organisms → cellular organisms → Bacteria	2270
TB_GS10_10DRAFT_10041984	All Organisms → Viruses → Predicted Viral	2155
TB_GS10_10DRAFT_10044130	Not Available	2083
TB_GS10_10DRAFT_10047873	All Organisms → Viruses → Predicted Viral	1971
TB_GS10_10DRAFT_10052048	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1860
TB_GS10_10DRAFT_10053731	Not Available	1820
TB_GS10_10DRAFT_10056066	All Organisms → Viruses → Predicted Viral	1761
TB_GS10_10DRAFT_10057355	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1731
TB_GS10_10DRAFT_10058024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → Roseiflexus castenholzii	1715
TB_GS10_10DRAFT_10066844	All Organisms → Viruses → Predicted Viral	1536
TB_GS10_10DRAFT_10070827	All Organisms → cellular organisms → Archaea → Euryarchaeota	1469
TB_GS10_10DRAFT_10076055	All Organisms → cellular organisms → Bacteria	1387
TB_GS10_10DRAFT_10083070	Not Available	1292
TB_GS10_10DRAFT_10093360	Not Available	1176
TB_GS10_10DRAFT_10093552	Not Available	1173
TB_GS10_10DRAFT_10095198	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1158
TB_GS10_10DRAFT_10097412	Not Available	1137
TB_GS10_10DRAFT_10106952	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Pustulibacterium → Pustulibacterium marinum	1054
TB_GS10_10DRAFT_10112048	Not Available	1013
TB_GS10_10DRAFT_10113786	Not Available	1001
TB_GS10_10DRAFT_10127948	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin302	908
TB_GS10_10DRAFT_10146163	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	813
TB_GS10_10DRAFT_10151479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	789
TB_GS10_10DRAFT_10153908	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	779
TB_GS10_10DRAFT_10156721	Not Available	768
TB_GS10_10DRAFT_10157486	Not Available	765
TB_GS10_10DRAFT_10162707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	745
TB_GS10_10DRAFT_10166234	All Organisms → cellular organisms → Bacteria	732
TB_GS10_10DRAFT_10167377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	728
TB_GS10_10DRAFT_10176306	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	699
TB_GS10_10DRAFT_10182632	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	679
TB_GS10_10DRAFT_10185121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	672
TB_GS10_10DRAFT_10186453	Not Available	669
TB_GS10_10DRAFT_10217274	Not Available	593
TB_GS10_10DRAFT_10244088	Not Available	542
TB_GS10_10DRAFT_10246004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	539

Sequences

Scaffold ID	Protein ID	Family	Sequence
TB_GS10_10DRAFT_10000151	TB_GS10_10DRAFT_1000015112	F057876	MRHTGSRTISVKKVDLIAKIKENKENHIVEYDKAVIAYKKAALELLAELTKKVNEGDLEIRLNLVTPINNSANYDKIIEMFEWEVNEIVELEQNEFIEYVQDETDFAVNAKFSNATYLR*
TB_GS10_10DRAFT_10000228	TB_GS10_10DRAFT_1000022817	F088949	MSEKQKEEKTVDATQKVETNAYVPTYNVKPEFKAAVLRTIGKYPYNQIAGIMNAINVPVMDHQTLTQVINVLGNFPYAEINSLISTINDYVEQVIEE*
TB_GS10_10DRAFT_10000522	TB_GS10_10DRAFT_1000052214	F011397	MKDFELLKRTYPVSEIDRYCDGLEYIANNSTIEERNEWDIHLDELQKVIKRGEKYIYQVAKEGKEFKTMCLCFSNYEIIRKKIFKLED*
TB_GS10_10DRAFT_10000522	TB_GS10_10DRAFT_1000052222	F020177	MDNINLNNTYWDRLRGYVSELRVDARWILRNNDDNKPYGSLRIVSHPDLPPGQLRANFTYVTKIRPKTKEEKIKTIEDYQMELIELEVYSIGEDIKTEVKIYEAPFHELQEMFDVKVFE*
TB_GS10_10DRAFT_10001356	TB_GS10_10DRAFT_1000135626	F092108	MGILSISVKCSDLCYTEYKDKNGNVTETDGYVPRKIGIGGGDYVNLEIDMETGQIQNWKPVTDEQVIASQKDLH*
TB_GS10_10DRAFT_10004301	TB_GS10_10DRAFT_100043016	F096680	METILPSVIFLSMVVVFGVDATRKRREFLKKRNRI*
TB_GS10_10DRAFT_10004923	TB_GS10_10DRAFT_100049233	F085105	MLLNSLNNQFIVLFPQNFFYSEIRKKWDPIVRRLKLPYESMEDYINASIQSITFPSVELANVEQGQGQFMITYRGGKELEPILDKNLSLTFKLTEGFISYWILFEQIEMFREYAPTVPFWPPMYVSFLDHHGFELMVFSFEKIIPTNLSQLDISYSKTVAEFTTFNLSLKYNRYNINRRFQELKGDNDII*
TB_GS10_10DRAFT_10030251	TB_GS10_10DRAFT_100302512	F002525	VWAGVDSAWEQEKLEAWKMLENAAESHTSGARFVGTLLTLRLTC*
TB_GS10_10DRAFT_10035569	TB_GS10_10DRAFT_100355691	F002525	GVDNAWEQEKLEARKMLVNRADSHTSGARFVSLLLTLRLLAF*
TB_GS10_10DRAFT_10038962	TB_GS10_10DRAFT_100389621	F002525	AGVDNAWEQEKPEARKMLVNRADSHTSGARFVRRS*
TB_GS10_10DRAFT_10041984	TB_GS10_10DRAFT_100419841	F050966	MRANLMSGSMWQGMKTRHGDGTEALSEEMESNGSATPKSRRHPLTLPPDVWDSARFRSIFLAS
TB_GS10_10DRAFT_10044130	TB_GS10_10DRAFT_100441301	F050966	MSGSMWQGMKTRHGVGTEALSEEMESNGSATPKSWRHPLTLPPDVWDSARFRSIFLASGFSCSQ
TB_GS10_10DRAFT_10047873	TB_GS10_10DRAFT_100478734	F049638	MKTKEILEKYKITRNTLCNWVKRGWIEVELTPSGRYIYIDKIKKSDE*
TB_GS10_10DRAFT_10052048	TB_GS10_10DRAFT_100520484	F007365	MDLKEHSIRQYMSNIDFKSDDWKVSKILEDMRRFLGEEPSIDVVYKKDVMINEVTGNAREFVDVEKIQVVFTGTDNRFHKIEFIVGEKI*
TB_GS10_10DRAFT_10053731	TB_GS10_10DRAFT_100537311	F067652	MNVGDPNGAVNVQLLPRESEMFVVVKITGKVKPEGAKGHY*
TB_GS10_10DRAFT_10056066	TB_GS10_10DRAFT_100560662	F084884	VHPTLGILARFQAFFYASAFFQLDGVPPPTPARVTQTVGTLLDVIGIQ
TB_GS10_10DRAFT_10057355	TB_GS10_10DRAFT_100573552	F026883	MMPLKHILKNKLLLQKHFHTQEVSMDEWPYWMFEENINIVNEIIEDEENQRKKDEESQSTSMPDTSSMMKSAQNMTSNMQMPKF*
TB_GS10_10DRAFT_10058024	TB_GS10_10DRAFT_100580241	F002525	WAGVDNAWEQRKLEARKMLVNRAESHTSGARFVRPRHCF*
TB_GS10_10DRAFT_10066844	TB_GS10_10DRAFT_100668441	F002779	MKNLKLELFNFKKDLALDQEEIFVIVESHMNACNQHSEKTIITSLNERLKPYTYDKSVKSLLENLNDDMANYELLYELKNLYSVLNSKNQGELYRQPINVLLQTINLETDRDRMSKVLNELAVYDWVPEIKLFVHNLTKSPEKRNNLLSGGNAESIFTIVEQVEEGHITLVRDSWFLLTENSIEKTLLENHVKDMETLQSLRTLETAMKYASVTENRINFRISEYMTIGLGVGKKTLFINDDELNGETTLESLFNSPIVPIVNKNFYPILLETSKNLDKFVELDVVKRVNNLINPYLEVFAFNYKNNTFVYRCDERYGNSFFKYESALELVNEVRNELNCDLTYFYENKLGKELIVKRKLEDKEREITLKLEDIHFNIDKIKGSIQMIGESETLTTALKNLEKRSTNL
TB_GS10_10DRAFT_10070827	TB_GS10_10DRAFT_100708272	F065251	MHLRSFKKGKKKYYFLAKSEREGKKVIQKSILYVGTADTMYEKLTKKS*
TB_GS10_10DRAFT_10076055	TB_GS10_10DRAFT_100760552	F104554	MNMFPEVASELNRKRIMAEMDAIRLEEEATKGKTLLDKNLALLGRLMIAGGEKLRNRNRSSQEARTVKLVNKAL*
TB_GS10_10DRAFT_10083070	TB_GS10_10DRAFT_100830703	F051137	MAKNKITTASYFIKRLRDCGYVCDKIYIEYSQADPRSWTVVVDPGYATVFITCFNNHNDLGEEYFEMHDGGQYIPEHFKIKTSSVEVIIEYLIKFGINHKSDSYLNG*
TB_GS10_10DRAFT_10093360	TB_GS10_10DRAFT_100933601	F002525	NAWEQEKLEARKMLLKRADSHTSGARFVSLFLTLETT*
TB_GS10_10DRAFT_10093552	TB_GS10_10DRAFT_100935522	F081921	MNPVPQPEPQEINLQERAVETLTDNSLPAAQVIEDQNNDAEQNSAPRFVP*
TB_GS10_10DRAFT_10095198	TB_GS10_10DRAFT_100951982	F017295	MTPQLEKIFFSYILKNKKFFDVVKPFFYRNAEIQFVYNVVRDYMLKASDTAIPSPRQILDMVTIEDKDGIITKEILKSILQVDLKEYDEKKFIEPKFNAWVLSNRLKTGTIDIIDETRGLDSINDFDKAMDAANRIKTIVNEMSSTNFVDDEDMGSDFDDPESHNQNTSALKVKSGFETIDHMLGGGWDQSSLNLLMAATNAGKSLWMQNFAVKA
TB_GS10_10DRAFT_10097412	TB_GS10_10DRAFT_100974121	F096680	METILPSVIFVSMIVVFGVDATRKRRDFLKKHKRA*
TB_GS10_10DRAFT_10106952	TB_GS10_10DRAFT_101069522	F095532	MKRQNVIIFIAKDKAPECWGNFKKLCLAKGFDKLPYHSLKAKNFPIIHKEWIIHKVPFL*
TB_GS10_10DRAFT_10112048	TB_GS10_10DRAFT_101120481	F030433	MSLFSKAKTQAPAKTTKGKDEKVRIKIDDPSFFNKVEKLEQLLDSQKRDKAKSDMLNDELKDLARDKWAELYEKVGKNPESVMLEYVKEDTDDTAQFMFVPTDKYITITPARAEELQDLYGETIVEEKTVFSFDNAMIEKYGEIISRMIVESDEISEKDKEKIIKATTTFSVAKGTIDNFSKLGEVQELMEATKPVVMLKNIGVIKG*
TB_GS10_10DRAFT_10113786	TB_GS10_10DRAFT_101137861	F031503	MDLKEMQELFRETANIQTPEGLAAYRAFAAALTTPILQKIELESIMRQLFAVERLAAGAQAVYPIAEDFEIPVWVLPGLGYIAQNFIEGIGEEVYVPTFSIDASADWKITYARDSRIDIAQRAAARAAKDLANYEEECGWRVILPAATSSFSGKG
TB_GS10_10DRAFT_10127948	TB_GS10_10DRAFT_101279483	F095532	MKQQNLIVVIAPTLEVWGNFKKLCLAKGFDKLPYHSLKARNFPILHKEWIIHKVPFL*
TB_GS10_10DRAFT_10146163	TB_GS10_10DRAFT_101461633	F064659	MILAYTDTTEFLVQVGRYAKGAYKTRYSFIGKLEQAVAYYNALNIGNGYKKRLYMPSSPKPVLARTSS*
TB_GS10_10DRAFT_10151479	TB_GS10_10DRAFT_101514791	F002525	WAGVDNAWEQENAEARKMPVNRADSHTSGARFVRCG*
TB_GS10_10DRAFT_10153908	TB_GS10_10DRAFT_101539081	F043393	WIRILYDNANKDIQFHIEKFIDPKRIDSIGYFDYFDIRHGDLKYKHLGEFFKVFDKNILKFSELLLEIWKNRDNCFMDPERVYQEWEEVKIIVLNSRILENLLTTSLKSNFPDDIKKLDDGFKLADGTVKMKLFKTLVEKMGCLERPTYYLGQNGNIFNLIPERQFFRDHYDDLTIKFDYHVNFKVKEDEDDNDFKMKIKLLLDGEELIDMDITIKMTSEMSGRLTSKYSFNLSSHFNYLVSLKRGEEIQEEKEED*
TB_GS10_10DRAFT_10156721	TB_GS10_10DRAFT_101567211	F026554	MKLEVNEIYHQYIIRVVIFALFTFKRQIRQPNVYKQSVYSFVEKRLPWKINLLIDTGEKLSKEDERDLILEELLNDKKVDFLKYVCVIFTTPLKQDCMMEIDLTDEKKYEHFLYS*
TB_GS10_10DRAFT_10157486	TB_GS10_10DRAFT_101574861	F093840	PKLISDDVKIVFSRFKSLSKYLDMIDYAKNEVDLYFGIKCDGKLEYGISYEESLPIGQFKLSQSVIKWIVQLDLKSANSLKKELVNLSYQDIILLGKIRNDMKDFTPGYHEQKSKPTLIDKVFTFGYYGIGKWDNGKLDEGELFNIKGNFSNWILSKKWSDKVLISVKAQSFWLNIHIKLK*
TB_GS10_10DRAFT_10162707	TB_GS10_10DRAFT_101627072	F002525	AGVDNAWEQEKPEARKMLLNRADSHTSGARFVSPLPF*
TB_GS10_10DRAFT_10166234	TB_GS10_10DRAFT_101662343	F002525	GVDNTWEQKNAEARKMLENAAESHTSGARFVRPVFVF*
TB_GS10_10DRAFT_10167377	TB_GS10_10DRAFT_101673772	F002525	CVTCVWAGVDSVWEQEKLEARKMLENAAESHTSGARFVSPFFA*
TB_GS10_10DRAFT_10176306	TB_GS10_10DRAFT_101763062	F025295	MGAKSCNFNSPDEIMVTGAGKATELLRRRKVLIPEKLKFFTRKSNL
TB_GS10_10DRAFT_10182632	TB_GS10_10DRAFT_101826322	F079376	MFDIMITRQPGRPCVSFESSRVCXTTEEGGRQMKHRESDSLVVPMKAGNAAGGKEATHGSVV*
TB_GS10_10DRAFT_10185121	TB_GS10_10DRAFT_101851212	F104554	MTMYPEIESELRRKSIMEEMDSIRLEKEATKGKTLLDKNLALLGNLMVSAGEKLRRRYHPSQGTSSVKLISKVS*
TB_GS10_10DRAFT_10186453	TB_GS10_10DRAFT_101864532	F002525	WAGVDNAWEQEKPEARKMLVNRAESHTSGARFVRHGRT*
TB_GS10_10DRAFT_10217274	TB_GS10_10DRAFT_102172741	F061835	MRKIEKFNNFNLIKEEASPRLTKSEDYWLKKGKIGKKVALYIHDDMDGMFSGIEMKKYLLNAGFTIEKYGILNYTEGWKYTTLDPKLINVVLDFANMPGDERDDMIDYYLDHHGIFTPEELEKYKSSPVQKKKTGSAYEAICQSLGVPQDSLTLDVIDMIDSAKYQDYGVDWQRLLDFNLSDIKKSD
TB_GS10_10DRAFT_10226675	TB_GS10_10DRAFT_102266752	F002525	AWEQEKLEARKMLLNRAESHTSGARFVGQFLFANV*
TB_GS10_10DRAFT_10244088	TB_GS10_10DRAFT_102440881	F067652	MNVGDPNGTVNVQLLPRESEMFVVVKITGKVKPEGAKGHCFKYVSELRT*
TB_GS10_10DRAFT_10246004	TB_GS10_10DRAFT_102460042	F002525	AGVDNVWEQEKLEARKMLINRADSHTSGARFVRWRFRDCDFML*