3300000207: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 10m

Overview

Basic Information

• IMG/M Taxon OID: 3300000207
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0053395 | Ga0026122
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 10m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 58467364
• Sequencing Scaffolds: 36
• Novel Protein Genes: 41
• Associated Families: 41

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
Not Available	23
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet 48, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001156	Metagenome / Metatranscriptome	763	Y
F003027	Metagenome / Metatranscriptome	512	Y
F003769	Metagenome / Metatranscriptome	469	Y
F009681	Metagenome	314	N
F010947	Metagenome	297	Y
F012717	Metagenome / Metatranscriptome	278	Y
F013232	Metagenome / Metatranscriptome	273	Y
F014506	Metagenome / Metatranscriptome	262	Y
F014789	Metagenome / Metatranscriptome	260	Y
F016995	Metagenome	243	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SI48aug10_10mDRAFT_c1001574	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3054
SI48aug10_10mDRAFT_c1001654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2954
SI48aug10_10mDRAFT_c1002099	All Organisms → cellular organisms → Bacteria	2483
SI48aug10_10mDRAFT_c1002597	All Organisms → cellular organisms → Bacteria	2107
SI48aug10_10mDRAFT_c1004050	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1530
SI48aug10_10mDRAFT_c1004344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	1450
SI48aug10_10mDRAFT_c1004482	All Organisms → Viruses → Predicted Viral	1418
SI48aug10_10mDRAFT_c1005426	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1253
SI48aug10_10mDRAFT_c1007087	All Organisms → Viruses → Predicted Viral	1051
SI48aug10_10mDRAFT_c1007555	Not Available	1008

Sequences

Scaffold ID	Protein ID	Family	Sequence
SI48aug10_10mDRAFT_c1001574	SI48aug10_10mDRAFT_10015749	F060125	MRLENDNTGKWWEIMLGWKWPHQGFTLGYDIVQPDEQHEENELIFITLLFYLGPLSIIYSWGNYNWSKDNE*
SI48aug10_10mDRAFT_c1001654	SI48aug10_10mDRAFT_10016541	F009681	YSRLYIDAHLCRPQCGDLGQVNSETGKGIVYLAAFRGPWIAAIFLQSKGYEIITDETCNQCGDRVKIIRNLSKLEKRRCRDCDDYFFIETVSWSTRSFTIIDNELERDRYYYQCPSHYGKQDKTTMFL*
SI48aug10_10mDRAFT_c1002099	SI48aug10_10mDRAFT_10020992	F052204	MDNYTETNVRIDFSRGIEFTPTVVFEGDEVESKIFSNKTHQIEELIEYITYHENGGCDVFI*
SI48aug10_10mDRAFT_c1002597	SI48aug10_10mDRAFT_10025974	F070096	MKKLLLILLFIPGLILGQLTSSTDGVDIDLVYSGTTTDANKSLANVQVNDTIVIKLNLSNLSSNTITYVHVDVQYNTNAWARVGYEFDVPTGAQTSNNNWSGNGMKWTVNSNYDANDLWAQWSTQGGSYTQVAGWEVDHVEAVSTSGITGNYATLKFLAKDAGDNHSYTDNIVFTMARITDNTGTAEYVFPVGKVRGYDNMSISHEPLEDLDSNIYVKADFNSNFDVTKVGVVVQKNGTPVS
SI48aug10_10mDRAFT_c1004050	SI48aug10_10mDRAFT_10040503	F048330	VLVDNSIEISNISITARDLIDTYHLMTLILQYSDS*
SI48aug10_10mDRAFT_c1004344	SI48aug10_10mDRAFT_10043442	F016995	MLQKNINIESSAREKRIIKRLNLKNLPFETSLEEFCSKYIEMISDLKESFILGSDKPGMQWCLSTIKKFKVFLLIFEANELGIEVYKESISSKLPEYSYKTIAQIIDEGLEKGFFIKMXARIQKKHDLKIRNIRPSEDLTVEFINSNINMISSFMKFLGKHK*
SI48aug10_10mDRAFT_c1004482	SI48aug10_10mDRAFT_10044821	F014789	MLETLKKEYLGMGYQVEYEKYGLKGIIEGLTITEKMHFVDWEDACDWAGRVTMNPSVPYVILEMRGQE
SI48aug10_10mDRAFT_c1005426	SI48aug10_10mDRAFT_10054263	F081544	MAVYAMALKESKNSNGIVFKTNAPSLEEAREFFRKLKQMSKEDFSELFIVTKVKN*
SI48aug10_10mDRAFT_c1007087	SI48aug10_10mDRAFT_10070873	F003769	MQQLKTLTVKTSNKVKSVHMETLYAVIENCYNSLQVIESDCTASNYFCASANIFAQLQYLYAENGCNDYVSLESVMDVFANNVTYYDEEYSLYESVVENTAMQKIKLQDYACLSN*
SI48aug10_10mDRAFT_c1007555	SI48aug10_10mDRAFT_10075552	F090872	IKSISNRGFDDDVKSKLLQKGYTADSFKVGDKAISYIVDKISDSEAKEFIDYTPKSFSSAPDRGNFSTVTGLSQGLVQDLINIEPGADAGGSAIGKGELFLALAFNDIDNRGGGGDLNFDGKNLEVKGTGGRLGQQGGRGSDFDYLGFLGDKYLEGEELDEFLNDNRNKLINYSIKEIFDAVDGDKSAVIKDIQKALDGVYFNKGLAKXYFNGPADFKDLAEMKIKLTKLNAEAYAQKTNVGAFIFMNSKTGEYVYVDVDNLNDSIDSGLFGTIVKDKIKGYQWNNPHPNMIIR*
SI48aug10_10mDRAFT_c1007759	SI48aug10_10mDRAFT_10077592	F097380	MTVHPDKKVREVLFSMFPLSYRIKKVPVATEVMDRKLFIDSIKTLLEIEDRKDFMLEEIGIDITAYEDLFFRVIENLFKIAFSNSQTELIQDYIYSLKPDKEWDGYVSVNLTGEEEKLVDIKTPEKLWQLLQKVK*
SI48aug10_10mDRAFT_c1007876	SI48aug10_10mDRAFT_10078762	F089505	MTYSELKSLGLDLTQLKQLKRNVSMLIEDIAVDNVQSMRVGSKVTINHPKAPGTWTINKINRKTVIVEQDGRQVKSSMSLLIAA*
SI48aug10_10mDRAFT_c1008134	SI48aug10_10mDRAFT_10081341	F097266	IKLNLSNLSSNTITYVHIDVQYNTNAWARVGYEFNVPTGAQTSNGNWSGNGMKWTVNPNYDANDLWAQWSTQGGSYTQVAGWEVDHVEAVSTSGITGNYATLKFLAKDAGDNHSYTDNIVFTMARITDNTGTAEYVFPVGKVRGYDNMSISHEPLEDLDSNIYVKADFNSNFDVTKVGIVVQKNGTPVSNNLYFDSGGQINITEYVLTSTDNYTLDFVTSYSATQWESLMDNVITLSDVTLTLNELGQYGHGNAGNVFDYGWQFTAVDSDENRDLTPQDAYNLLGHVMGAIDIIPDDGTGIFNNTFHPVKKADWNGWSI
SI48aug10_10mDRAFT_c1008193	SI48aug10_10mDRAFT_10081932	F033598	LAPLDIASRLRAPLPANRSIIVLSTISNWSQLKRVSLVLPRVGRRPXASGKLNFLPLRFPAIILKVLSLIGLK*
SI48aug10_10mDRAFT_c1008286	SI48aug10_10mDRAFT_10082861	F013232	AKSGVPMWWKPGIAFLKQDWINHPHLKHFRNKKSTDSKCDCSSPKLVELWEHDSCVRGRIDTTVCVKCNEVESLSIVR*
SI48aug10_10mDRAFT_c1012051	SI48aug10_10mDRAFT_10120511	F017640	MYHFVTSSKDSTIYLQQPSQNTGLDEIIEVSKTFYGNLKDNARALIKFDTTPLSQSIA
SI48aug10_10mDRAFT_c1012253	SI48aug10_10mDRAFT_10122533	F049597	EQYESTEENLVQDLKKSLEDTINETKYILDDLKQTVEKTIQDQTISDSTKKIVDSVNSDIKNSIEEKHREIINTIKTAKAINNFEEE*
SI48aug10_10mDRAFT_c1012683	SI48aug10_10mDRAFT_10126832	F022632	MKKLLILXXFISCSDTIYXERPIQEVPETLFMPQAVGLKLESYIVEDKVRINTKLPRDGKYRIKILDFSNTIISQEIITGKEGDNILNIYVNSMPVSSYTVELYTNTNDFIGRQTFSMK*
SI48aug10_10mDRAFT_c1012732	SI48aug10_10mDRAFT_10127323	F039348	VSGTISVARGRKMKEVSLTEILHTLDIWWAEANNDHNDGYVQKDYKDRLTAIRKSLQQKSPPVNFEDTKEEMCF*
SI48aug10_10mDRAFT_c1012865	SI48aug10_10mDRAFT_10128652	F078711	MSSGNNVQYLGILEGATLIFVCIFTSRTCISFTQRLSRGISIICLIGILYFASFWLLLISSELLHDHIEWFSFFEPDRVVILYSFTWLLPQTAKSLLIFLMGYREDDDSFEHSMTRILNSLNEERKYFNQLRKELNMGGGQLRRNLDR
SI48aug10_10mDRAFT_c1013024	SI48aug10_10mDRAFT_10130243	F091853	MERHQLRFFLTQCEYKWSHAHKSMEDLWVRRELGEELSKYIATKGYDLVLIRSNSQTMPEDIYCRCDIYVDIPDDKQATLFALKYNKALPLKRGQRDNEYW*
SI48aug10_10mDRAFT_c1014725	SI48aug10_10mDRAFT_10147251	F078811	IILENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA*
SI48aug10_10mDRAFT_c1015109	SI48aug10_10mDRAFT_10151092	F003027	MKTAKGNDKLGKENCIVVSRPVGDTCPPSCEFLGNGCYAEQLEKIYPGVRPAGMQNLITEKNKIRAMLINAEKKGNDLRWHERGDFFKDGKELDNEYVDNIIWACESILSEGGKLPKMWAYTHIYDTKLSMVLGKYITMYASIHNEDDWAVAKAAGFELFAWCDSSENIAPKRPRSKKK
SI48aug10_10mDRAFT_c1015858	SI48aug10_10mDRAFT_10158582	F023213	MPFKVGDMLKYHHPSSADEENEQMDLYHFGKDHLDGKLALVLEKSLPAADGTIDYLCYIDESKMWLDGEFLREVKDGNKKSNI*
SI48aug10_10mDRAFT_c1016740	SI48aug10_10mDRAFT_10167402	F001156	KPKDRSRQILERIVGTKSKATLAEAFKMAFAEKYDVKRDEIKQGIVDKVYNNEKVDK*
SI48aug10_10mDRAFT_c1018134	SI48aug10_10mDRAFT_10181341	F036232	GLNAMVYSNFQQFMLTANFSKVHANKEGRINRVYSASLGGMKMFTTYMGMMNHSIVWLGEKGSVKGLAFGTTLTSVDVDVRQGLIYYDNVLLGNSLTGFYTKSFNFNRLTISPMLAVSSPFMQFDMHQHTTVWNPDVMIIGGSNFTYKLTQRFGLNVGINIIEATIPEFPTLKTFTIGSRLSF*
SI48aug10_10mDRAFT_c1018175	SI48aug10_10mDRAFT_10181752	F010947	MRKDIKKILNPALVEKWNKNKNGDLNGIKFNKGDLVSRADCDGESLGIVLEQDGVMATVQWTKQPEDVRLQRRTFVSSLKLMSGVDK*
SI48aug10_10mDRAFT_c1018376	SI48aug10_10mDRAFT_10183761	F019557	MTKYIDMAMKIASLAVIPLLGWVISLEVANAERDFQLQVLYNKVDNLEKVNTAVQEYAVRLGQVDQKLESMEDTVDEIRQDIKDLLRR
SI48aug10_10mDRAFT_c1018376	SI48aug10_10mDRAFT_10183762	F041443	KMKEKKKLRRGMRVKLKTGQTVIILDDPPAIIGNKNTKLLHGPIILEDYVYVISPDYPNKVLMEKIDDIDY*
SI48aug10_10mDRAFT_c1019269	SI48aug10_10mDRAFT_10192691	F012717	NIKDKCHDFFYSSALTHAISLEIASSTYADKCLSYEMLCKRIPSKLGCRSTIYSTLNIAVSKGFFIKQYSKKDRRVRSYCLSEEYSLMLTQWYLDQKKYFSN*
SI48aug10_10mDRAFT_c1019420	SI48aug10_10mDRAFT_10194201	F014506	KKEKKKKFMPIVLKADVMSMQALTRDYNQVLAIGASQASIYGDISNTANLQIYDNLKQVGLSLGRSKVSLNENYQVTWVDAVNVSYMRNYKMNSTTLSVSRMKPMGKWGTVGVGINYSYMFGKDAFGETLPKMGSLGYNVLYTNMVKINDRIMYTPALIGAQNPYSYTQKTDKFDAFGTVSNDFIGILANS
SI48aug10_10mDRAFT_c1019527	SI48aug10_10mDRAFT_10195271	F052534	ATLCTTXNTLFVHNNKTVKKAAFVYTQNAQKVVRNLNAQQQAAFNNLPATYMQNAKQFLINKLAQSTILKS*
SI48aug10_10mDRAFT_c1019527	SI48aug10_10mDRAFT_10195272	F054088	MQQLKTITKTTTTKTKSVHVNTLYTIIENCFNNLQVLESDCTAANYFCASANIFAQLQVLYANTASCNNNNYVSLESIMQVFANNITYY
SI48aug10_10mDRAFT_c1019828	SI48aug10_10mDRAFT_10198281	F074021	MKLFFENWRKHLSEDKNTAQVLREVDEEELGHIQTALEEMEPTDLA
SI48aug10_10mDRAFT_c1022171	SI48aug10_10mDRAFT_10221711	F065792	PSVRVSSATTATTPELTDNQLIDANANFITTYNADGSILNEGVSRGMVVYNMFATIASSTNSPLVATIVEVVNNTTLLLSANIFPFAGGTAVSAYKIYDANDIASPGAQIYVGVAGNLYVETIDGDLVFIEDVPVGEVLPVVVQKVLVGAAAAGGQPNTLTTAGKLTAFI*
SI48aug10_10mDRAFT_c1022889	SI48aug10_10mDRAFT_10228891	F091332	FPGTPDYSESHNKIYGSRSARSRFNNLRTDKILYRNYVLSTNNLLSESVTNDLVDSQTDILFLRMRTPELDEICWNWSQELLLHRDYLRSVGIDLPIENDNRKIIQAEMMVRSGYLHKIWHNSLYAMSELGMEIPNWCKILPYNPLVNAFHGTNRDDEDIGERLLSILEEKYPE
SI48aug10_10mDRAFT_c1023596	SI48aug10_10mDRAFT_10235961	F101904	MRNLQVHYTYKTKNATVQDHCIVQSKTTRFSKTQQLNTQLKLATQLNLKHFYAVTLTHYSVV*
SI48aug10_10mDRAFT_c1023596	SI48aug10_10mDRAFT_10235962	F103560	MPXFGFTVINYNTLLIVNCTTQEQRYANNVTLPSLYAVTQKQLAKLFKTAR*
SI48aug10_10mDRAFT_c1023792	SI48aug10_10mDRAFT_10237922	F025861	MLKNIIILVVIIIGGYMVYTNYMQNEEIAALDGVVNEEHPGELNPDDVV
SI48aug10_10mDRAFT_c1023793	SI48aug10_10mDRAFT_10237931	F031924	DRGPNDLERRIDEQDKTIAHLKRDNKTLAKEVSDLIEEKKQMLDNRS*
SI48aug10_10mDRAFT_c1024875	SI48aug10_10mDRAFT_10248751	F028941	MNPNCIDITNLTSDQLDTLFNDLTTGKKTFKQAVAENPAPFSVIIEDEEKEQKDVKKL*