NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000201

3300000201: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 135m



Overview

Basic Information
IMG/M Taxon OID3300000201 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046785 | Gp0053651 | Ga0025994
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 135m
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size76691166
Sequencing Scaffolds37
Novel Protein Genes39
Associated Families35

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → Viruses → Predicted Viral4
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
Not Available24
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5802
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote2
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal inletsea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSaanich Inlet 54, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)135
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F002125Metagenome / Metatranscriptome591Y
F004439Metagenome438Y
F011521Metagenome / Metatranscriptome290N
F012582Metagenome / Metatranscriptome279Y
F012919Metagenome276Y
F013570Metagenome / Metatranscriptome270N
F015796Metagenome / Metatranscriptome252N
F016883Metagenome244N
F017324Metagenome / Metatranscriptome241Y
F018015Metagenome / Metatranscriptome237Y
F024324Metagenome / Metatranscriptome206N
F027810Metagenome / Metatranscriptome193N
F029559Metagenome / Metatranscriptome188Y
F035724Metagenome171Y
F038848Metagenome165Y
F042014Metagenome159N
F044148Metagenome / Metatranscriptome155Y
F044162Metagenome / Metatranscriptome155N
F049038Metagenome / Metatranscriptome147N
F049096Metagenome / Metatranscriptome147N
F050420Metagenome / Metatranscriptome145N
F051972Metagenome143N
F058452Metagenome135Y
F059474Metagenome / Metatranscriptome134Y
F067831Metagenome125N
F068917Metagenome124N
F071312Metagenome122Y
F071971Metagenome121N
F073750Metagenome120Y
F074745Metagenome119Y
F082823Metagenome / Metatranscriptome113N
F088719Metagenome109Y
F097479Metagenome104Y
F101858Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SI54feb11_135mDRAFT_c1003360All Organisms → cellular organisms → Bacteria → Proteobacteria2770Open in IMG/M
SI54feb11_135mDRAFT_c1003756All Organisms → Viruses → Predicted Viral2555Open in IMG/M
SI54feb11_135mDRAFT_c1004226All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon2345Open in IMG/M
SI54feb11_135mDRAFT_c1005122All Organisms → Viruses → Predicted Viral2045Open in IMG/M
SI54feb11_135mDRAFT_c1006315Not Available1749Open in IMG/M
SI54feb11_135mDRAFT_c1006801All Organisms → Viruses → Predicted Viral1645Open in IMG/M
SI54feb11_135mDRAFT_c1008020All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales1445Open in IMG/M
SI54feb11_135mDRAFT_c1008833Not Available1346Open in IMG/M
SI54feb11_135mDRAFT_c1009158All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus1308Open in IMG/M
SI54feb11_135mDRAFT_c1009680Not Available1250Open in IMG/M
SI54feb11_135mDRAFT_c1010020All Organisms → Viruses → Predicted Viral1215Open in IMG/M
SI54feb11_135mDRAFT_c1011413Not Available1101Open in IMG/M
SI54feb11_135mDRAFT_c1011538Not Available1092Open in IMG/M
SI54feb11_135mDRAFT_c1014290Not Available932Open in IMG/M
SI54feb11_135mDRAFT_c1014312Not Available930Open in IMG/M
SI54feb11_135mDRAFT_c1014763Not Available908Open in IMG/M
SI54feb11_135mDRAFT_c1017875Not Available794Open in IMG/M
SI54feb11_135mDRAFT_c1019027Not Available761Open in IMG/M
SI54feb11_135mDRAFT_c1019324Not Available752Open in IMG/M
SI54feb11_135mDRAFT_c1020138Not Available731Open in IMG/M
SI54feb11_135mDRAFT_c1020731All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580717Open in IMG/M
SI54feb11_135mDRAFT_c1021329All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote704Open in IMG/M
SI54feb11_135mDRAFT_c1022833Not Available671Open in IMG/M
SI54feb11_135mDRAFT_c1024515Not Available640Open in IMG/M
SI54feb11_135mDRAFT_c1026319All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote610Open in IMG/M
SI54feb11_135mDRAFT_c1026850All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580602Open in IMG/M
SI54feb11_135mDRAFT_c1028774Not Available575Open in IMG/M
SI54feb11_135mDRAFT_c1028865Not Available574Open in IMG/M
SI54feb11_135mDRAFT_c1029801Not Available561Open in IMG/M
SI54feb11_135mDRAFT_c1029953Not Available559Open in IMG/M
SI54feb11_135mDRAFT_c1030225Not Available555Open in IMG/M
SI54feb11_135mDRAFT_c1032039Not Available535Open in IMG/M
SI54feb11_135mDRAFT_c1032457Not Available530Open in IMG/M
SI54feb11_135mDRAFT_c1033096Not Available523Open in IMG/M
SI54feb11_135mDRAFT_c1033450Not Available519Open in IMG/M
SI54feb11_135mDRAFT_c1033864All Organisms → Viruses → environmental samples → uncultured Mediterranean phage515Open in IMG/M
SI54feb11_135mDRAFT_c1034862Not Available506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SI54feb11_135mDRAFT_c1003360SI54feb11_135mDRAFT_10033604F024324KKAGNCDLDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
SI54feb11_135mDRAFT_c1003756SI54feb11_135mDRAFT_10037561F059474MAFKAIDRSETLEVVSTDDPAIDLKKSDVDAYKDSHDMKHLSXIXGXQPTVFHLGTITFMKFAEIKDKHISFDLGDNGQEIKTNLFGLTADSLRXSLKKADNLPFPIKVERGRLSDTTMDKLARLGIVEELGNVALNLNGFGDDEEKK*
SI54feb11_135mDRAFT_c1004226SI54feb11_135mDRAFT_10042262F049038MTNEIKYLNLGSLTPDIYSSVWEYGNLIDINCPIVIKFSSKKHIVAFFGNSKLDISSFFNGEIEYPIVRVYEDPDNIDDDKLAYWIEGPNCFNFILYFSRDVKPLFLQAVRECCFKFGIETFWNGRNDIFFKIRNKQKKFFGCSYEVINNCHVTVGTITYQFDSKLATKVKELDXNNVLKTPXFEPDGGDVSDVVGGLWEVDSTIDTTKFNDEFLKILMKKLGGTLEKNNLSSEELQLLISRGKKRLEDEEWLLKGNNENFI*
SI54feb11_135mDRAFT_c1005122SI54feb11_135mDRAFT_10051221F097479FKYITDGADEQAHEDWEKNLADGIIEFKERVLDELES*
SI54feb11_135mDRAFT_c1006315SI54feb11_135mDRAFT_10063154F049096ITILTLSAFITVGCNMPTEPQQPNEIEEIEMMLNEVNDNDVPITLSKGDDDKKGKGKKGKGRKPSFRKVIHRLDRYLTNHPNEEVQGYLDTAVLNLAVLRQMKQDGVKDGFKELVKETRQLLRKAIKAVREIRLGDKK*
SI54feb11_135mDRAFT_c1006801SI54feb11_135mDRAFT_10068017F027810MNNEIQKVGIDAFNDLAKSHDAHVKEVEKLQEELNELNKLKLVDQHGELLLECRIGDENHRLLLEV
SI54feb11_135mDRAFT_c1008020SI54feb11_135mDRAFT_10080201F044162MLKKLILLIIIGAIGWYAYNHYMKSEIDNAIDTTEEVVGNV
SI54feb11_135mDRAFT_c1008833SI54feb11_135mDRAFT_10088331F067831MKLNYFNFNNYSSSIATQSLQAAAPFLTGSNPEYWTGKGNNHGVIAGYDWVPSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVIPSLNLVGDITASLDIDGFTSSIYVQPSYPTPVPDFDVPNTTFVLRFGFDSASPIDYLASDKREFRNFASSSGIESLMPRKMADLPDGFSNGVGVPDVLIKDPTVDYQTLLMNSFQFYDITDDNKNYLLSQSYCEEFILPDLNYNGAYYSEVRGIMMLTPQENIFLQPRNPITADVNVFQTHLPHYILSGDSGSYTTTTITRKGAISGSQ
SI54feb11_135mDRAFT_c1009158SI54feb11_135mDRAFT_10091581F071971MVVLYNAESTINAINNTAKYGLENLNKVHAALSTGLTITQIDIPIINAPDAIAVHRYTSPTIFSPVSVEMKNGAIENNTITTVEIAIILEDVFSDCTTVNIGTLTFL*
SI54feb11_135mDRAFT_c1009633SI54feb11_135mDRAFT_10096331F038848LSWDEQIVNNFKVKTAHFFKLKLKIAQTEKEASLYPEHQELMEFAKSKGWKVKVWDAPIELEIYTREVAKKELGK*
SI54feb11_135mDRAFT_c1009680SI54feb11_135mDRAFT_10096803F029559HASTRLAIAAPKINLRKLWWNIAAGIAHTRIFFDGSDAEQTIAYLVAGNGYINYAGGGNHIGAISMGAAAGNSSNVLGDVSVTTVGVAAADTYMIGIEIGKMEGFELPNFMKNGQLGYNHNAAGFGDSY*
SI54feb11_135mDRAFT_c1010020SI54feb11_135mDRAFT_10100202F018015MKENQVFKMNKKWREFRLDEKLNEENESLWTWVYKGFLGGFKKAEKKGGGSVSLDEVARGVAFLVKTEFGHHAKNDFIKSLKXYIR*
SI54feb11_135mDRAFT_c1011413SI54feb11_135mDRAFT_10114131F016883KLSTTFSKSWLEKKIMCGLCNFGCCNHPTFHVEISEDEQEFYQKKYGLDLELEWKQDGCCKLLEDDNTGCSLGDDRPVFCKLYPLVENKSNRLVMNNWGYLHCPKSQHYELDKIVEGKYHYKLKPKVRKHNKREELILDDEIDNVVHQIWLQSKDSIIQRYGQEYYNRIKNEMKQTIKHEFF*
SI54feb11_135mDRAFT_c1011538SI54feb11_135mDRAFT_10115384F000615RLRLFYECSDGEMGFAEMVMSYEDDIASFIKHWKTGGRIVITEHIDLV*
SI54feb11_135mDRAFT_c1011636SI54feb11_135mDRAFT_10116361F088719TILGDKIFFTKRIHHWKEDKKKRFPYGWYWGDKDGELDSIGLEITDIEKLKHIGIYLKEITDKHLNSKIMSWDIINEENDFKVLEFAMGFEKIFIDNLFSYDIKEEKILKMENKLKDNAFYTQEELLKMIGA*
SI54feb11_135mDRAFT_c1014290SI54feb11_135mDRAFT_10142901F035724TTLTFNNNPESPYEREVIKHNSSVQMEDGSFFVYSRSVTNYRYTISVVLTSESERDSLESFYDSTVNGMEKTFSYTDPYSDSYTVRFEDELHISEIFKDRMYRATFNLIQTA*
SI54feb11_135mDRAFT_c1014312SI54feb11_135mDRAFT_10143121F004439GDGVRNIAKLQGKKKQISAFFSMFSRYMEVGVATQGGVHSVLEMDADVLLSAKGDVMSHLDQNGRRWTSISDLKETSRWTKFTAVEKDLEKMFDALVKKYLKRGEFQENATVWELWRMAERKVDKKTMSMIIKDYMDGMEKVIKKNIDTFENAMLSYAKKRSTDLSWDEQVVNNIKVKTAHFFKLPLKIAQTDDQIEMSEKQQELMEFAKSKKWSIKMWDVAIDLEAYTRAVAKKELGK*
SI54feb11_135mDRAFT_c1014763SI54feb11_135mDRAFT_10147632F017324VGFYQTHKGYVDNKTTVNSQTAQRGRIYELRYKSETSSKTKYLVMGLNVYPKSGGKSKQLLHCLDLDEIPVAEVRKLIKTGTTIKTRVEEGLSHQRLEIDGRNTAYYDXELKKLQNRIPGVYKTFKLSKITRFELTDYDFLSIADTATKKKFGIVDEN*
SI54feb11_135mDRAFT_c1017875SI54feb11_135mDRAFT_10178753F071312TTEWTKDEIALIKRTKVKVDGKMHKFSIEKDGGKNKVAKFDVKHKENPSYGIIEKYLIKGKTSYDGFFSGYVGQGMGWKSSEVKPSKEFDEEQNLKLLATQFKKLQTIINRVW*
SI54feb11_135mDRAFT_c1019027SI54feb11_135mDRAFT_10190272F058452ELLLRKERKVMTNYSQDEDDRINDRLTRAKRNSVSSVKIGKDETPHTAVDIELSDDDFMGVALQAHERDITFNKMINIILKDSIKQAEYKFEHGNKPQLLNEGK*
SI54feb11_135mDRAFT_c1019324SI54feb11_135mDRAFT_10193242F051972IEHINKTLNDEQKIQILNVDDKKSRVIYDTILTSNKLRAITPMLYNSNIGTFLLGYQDKRNVEQFLKANPLKERKPLKPIPTFDIQNSSKKDFDNWKKSVILWYGENQKDLPSNVISQERMIDMVYTQFMAYRTKPLTIEDRLSKLEEQSHEPQNYREECKMMNKELKILKLQIKKLKRLK*
SI54feb11_135mDRAFT_c1020138SI54feb11_135mDRAFT_10201382F101858MIKVESILKWTVEGSLLKKLKMVRAQILSKNPDAVAISDKDLHITLASGSGWQKLRSRIKANDIDEPEFSIDIDPSAKVIEKAGSKSWYVKLKNQQDWKEYV
SI54feb11_135mDRAFT_c1020731SI54feb11_135mDRAFT_10207311F011521QNGLVLYDITEGNQIKGYSVFARHIQIKNYPVGFETKKITVDEGRHPDFSDYDWIFKFKVASMENLKMNDQSHQAIYTKLWGSRPTSTTNCKSTQPGMNFSNSTGEIYVESWFDLKDNKLLKQVFTKYGCVPSKRLISKETWILIN*
SI54feb11_135mDRAFT_c1021329SI54feb11_135mDRAFT_10213291F042014EESQARRANPQTAPGAAVDGGVFSTSHLDTGYGLACDIRRVVLYEGLRRDPRTGRSVATGDMARQYMNPGQAIDRTITLEGHIELDKFSIEMMALEDVVILRDLCNNHLNSMVKKVSILR
SI54feb11_135mDRAFT_c1022833SI54feb11_135mDRAFT_10228332F082823FRKEKFLIDTGTVYDELYIINTKGLEIDEVDHMDSIQVGSSKAVIRRALKKSTKGKLQNRILLNAFIKKVA*
SI54feb11_135mDRAFT_c1024515SI54feb11_135mDRAFT_10245151F074745MIGGSKSVYRNMHPDDLIIFNANVLMPGYGKVWYGDLNLTEDYLVLREIAQNLNTDLYVLWETDGRFGLEMKPLNELFDKAVWNTSE
SI54feb11_135mDRAFT_c1026319SI54feb11_135mDRAFT_10263192F044148EKTKQSVLDDVLDDYGLTEAYTDLGGDGGEEGTTTSETDKDYDLHQFSDPKYVPAYTDKSFQTAPDKTGIGQDLGDKQSGTPKKAKGQATAAKTPAKVDAKTGHEKPAVGTKSDTPDKAIGKADSAKIAPRVTTKAGVATQKEEVEIGEKITEKRSIAFARKFYQKEKNNV*
SI54feb11_135mDRAFT_c1026850SI54feb11_135mDRAFT_10268501F050420LELHNLLKNNMAYLHTPRLIFFLLLPIYAQAEEDLKYSYEHDSIGDKYDAEGDITFHTHKDNGVVFEYAHVNINWKGGFFKSSITDDFIQKKPIQNGLVL
SI54feb11_135mDRAFT_c1028774SI54feb11_135mDRAFT_10287742F002125ASLTSVDLFVSKDTAKLMFLRKRQQPIIEVQKVNK*
SI54feb11_135mDRAFT_c1028865SI54feb11_135mDRAFT_10288652F012919MKISRKKLNLEIAKYLHRGGKITKLPDGPNYRFQPYGARVTPGDPIVDLTITDTPTTQQQIKYVEEN
SI54feb11_135mDRAFT_c1029801SI54feb11_135mDRAFT_10298012F015796RFINRVSVQMNKQQMLKYDDXRDRILIREWFKLKGVVLEHGSKYGVDLKGKEYDVEISHLSFDSLWEQWKKENRFRIEIRKRNHYWNGIYNKTHTTHFVQMNKSGHELLVYPEDLIMEYSNNEVELEYLRGFNLKERTFMFIPFDIGKDVIKRYEI*
SI54feb11_135mDRAFT_c1029953SI54feb11_135mDRAFT_10299532F015796KNGMGEVSKMNKQQMKKYDDTRDRILIREWFKLKGVVLEHGSKYGVDLKGKEYDVEISHLSFDSLWEQWKKENRFRIEIRKRNHYWNGIYNKTHTTHFVQMNKSGHELLVYPEDLIMEYSNNEVELEYLRGFNLKERTFMFIPFDIGKDVIKRYEI*
SI54feb11_135mDRAFT_c1030225SI54feb11_135mDRAFT_10302251F059474FKAIDRSETIKVVSTDDPAIDLANSDIAAYIDSHDMNHLSFIDGEQPTTFHLGTITFMKFAEIKDKHISFDIGEAGQEIKTNLFGLTADSLRYSLKKADNLPFPIKVERGRLSDTTMDKLARLGIVEELGNVALSLNGFGDDEEKK*
SI54feb11_135mDRAFT_c1032039SI54feb11_135mDRAFT_10320391F035724EPPYEREVIKHNSSVQMEDGSMFIYSRSVTNYRYSISVVLTSESERDALESFYDSTVNGAEKTFEYTDPYGDVYTVRFDESMRISEIFKDRLYRATFTLLQTA*
SI54feb11_135mDRAFT_c1032457SI54feb11_135mDRAFT_10324571F013570MELEKIKKKREELMTNYNSLVDKRIELEKQLEITNTDILTMRGAILLSNEFIEEEENPEPKPLFPEKEVVVN
SI54feb11_135mDRAFT_c1033096SI54feb11_135mDRAFT_10330961F035724MIFKYPTLASPTTTLTFTNNPESPYEREVIKHNSSVQMEDGSFFVYSRSVTNYRYTISVVLTSESERDALESFYDSTVNGMEKTFSYTDPYSDSYTVRFEN
SI54feb11_135mDRAFT_c1033450SI54feb11_135mDRAFT_10334501F073750MNGQDVKDLNVILERLEHHEDRTKEMRDDIKFIKENLF
SI54feb11_135mDRAFT_c1033864SI54feb11_135mDRAFT_10338642F068917LQFKSEKDAKNQLNGLDWQFRGNYKIVKLKESVNEKISKDEWSEYPKYARKLKPYMQKLLKVPLKVRVIKQANHNPWIEVRVAKFGKDIIPNDFRVKVAKSIGASAVRDWDDVTYGTIRSNSIDLRYEQWVKIIGDLK*
SI54feb11_135mDRAFT_c1034862SI54feb11_135mDRAFT_10348623F012582HLSTTMIQWAEENKIRTKRNGNYEIPQRNGIDWKFDFKFVTKLDSMLADGLDNKLNKKEMEMCNQLYEYYGNVYVKF*

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