3300000188: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 60 08/10/11 150m

Overview

Basic Information

• IMG/M Taxon OID: 3300000188
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0053654 | Ga0026219
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 60 08/10/11 150m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 97531493
• Sequencing Scaffolds: 42
• Novel Protein Genes: 47
• Associated Families: 42

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	26
All Organisms → Viruses → Predicted Viral	12
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet 60, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005546	Metagenome / Metatranscriptome	397	Y
F015932	Metagenome / Metatranscriptome	251	N
F016996	Metagenome / Metatranscriptome	243	N
F017149	Metagenome / Metatranscriptome	242	Y
F018617	Metagenome	234	Y
F018621	Metagenome	234	Y
F020253	Metagenome / Metatranscriptome	225	Y
F023366	Metagenome / Metatranscriptome	210	N
F024583	Metagenome / Metatranscriptome	205	Y
F027418	Metagenome	194	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SI60aug11_150mDRAFT_c1001217	Not Available	6410
SI60aug11_150mDRAFT_c1001865	All Organisms → Viruses → Predicted Viral	4874
SI60aug11_150mDRAFT_c1002557	All Organisms → Viruses → Predicted Viral	3968
SI60aug11_150mDRAFT_c1004935	All Organisms → Viruses → Predicted Viral	2521
SI60aug11_150mDRAFT_c1005041	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2486
SI60aug11_150mDRAFT_c1005617	All Organisms → Viruses → Predicted Viral	2298
SI60aug11_150mDRAFT_c1006271	Not Available	2139
SI60aug11_150mDRAFT_c1006727	All Organisms → Viruses → Predicted Viral	2030
SI60aug11_150mDRAFT_c1007263	All Organisms → Viruses → Predicted Viral	1922
SI60aug11_150mDRAFT_c1009588	All Organisms → Viruses → Predicted Viral	1542

Sequences

Scaffold ID	Protein ID	Family	Sequence
SI60aug11_150mDRAFT_c1001217	SI60aug11_150mDRAFT_10012171	F046469	MEYLAIAVLSCLVGSCSVQNTKAIEGEMPFVQGTPTKELLHEMPALINQPTDGSGNPVKITVAVYAFPDETGQRKQVGLSTAVSQGADVWVIQS
SI60aug11_150mDRAFT_c1001865	SI60aug11_150mDRAFT_10018651	F083345	NTWEVSDEDSDALVQIGAVSMIKKGLKVVEEEEYYAKLQKLADTDEWESDDDKEGM*
SI60aug11_150mDRAFT_c1002557	SI60aug11_150mDRAFT_10025576	F039110	MTKAASKKAVAKKTSAKYQLKALRDGSHGIDGGIYTYKKYDIITLSKKGHFDSMKELACFDEV*
SI60aug11_150mDRAFT_c1004935	SI60aug11_150mDRAFT_10049358	F083345	VSEARKGMVSDYIVLPYEDVPDEIKDKAKGNTWEVSDEDADALLQIGAVSMIKRGLKVAEEEDYYAKLQKLADTDEWESDEDKEGM*
SI60aug11_150mDRAFT_c1005041	SI60aug11_150mDRAFT_10050413	F089151	MDNFDFKKYLAEGKLHEENQSPKFKIGDYVQPIEGATYYFLDRPRGTISGKYVGQINDSFINKPENLETKDGEYLYHVEKLNYRGKMRSSYAFKESDLEIIPNPMEYIKSLEPYRRRN*
SI60aug11_150mDRAFT_c1005617	SI60aug11_150mDRAFT_10056174	F029561	MSNQVDKLTDPAFEHTSILSRGQLQMIEDDPTKMETLARLMGAVNLDNLFRHMQNPTINPATRLEFQKMLNKMGKLEPDGKDAVGANGPQVVINITRAKDKEEAITIEGST
SI60aug11_150mDRAFT_c1006271	SI60aug11_150mDRAFT_10062711	F067831	MKLNYFSFNNYSSSIVTQSLQAAAPFLTGSNPEYWSGKGDNYGVIAGYDWVPSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVIPSLNLVGDITASLDIDGFTSSIYVQPSYPTPVPDFDVPNTTFVLRFGFDSASPIDYLASDKREFRNFASSSGIESLMPRKMADLPDGFSNGVGVPDVLIKDPTVDYQTLLMNSFQFYDITDDNKDYLLSQSYCEEFIQPDLNYNGAYYSEVRGIVMLTPQENIFLQPRGSITADNNIAQALLPC
SI60aug11_150mDRAFT_c1006727	SI60aug11_150mDRAFT_10067274	F046847	MADEQTEQVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELADILGVDSIEQARELINAKRETDEANKSDLDKAAELIQTLNSTIDGLESNNKMMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIEQLKGDKPYLFSGGEVQPKKVDATSNRASLDVGERVKSAKTMAELY
SI60aug11_150mDRAFT_c1007263	SI60aug11_150mDRAFT_10072635	F055857	MSARIFMHENEHMNGYVFTDLVSKLKLERAEKSKXKMIKEIKRRQGAPKIIK*
SI60aug11_150mDRAFT_c1009588	SI60aug11_150mDRAFT_10095881	F103400	LATPPDGTKLSLGKLGRATAVGNSDYISKTSLNSSARDSGTGKVSLSDFYISAIDNTLNG
SI60aug11_150mDRAFT_c1009745	SI60aug11_150mDRAFT_10097453	F055781	AGSGLSMLGVAMGCKLYNKNIKTIYPVALSGYVYKNKKMWYDRLNDRHKFDGDFKVVQSDYPYQHKLKLDESLPLDQTYEAKAWDWMVKNIEPSENVLFWDVGIKEYDLSYIEPIKWHKSEYEMIIDRELRRKHEQVKHNFF*
SI60aug11_150mDRAFT_c1010198	SI60aug11_150mDRAFT_10101985	F098166	MNILVSKDEEQSIYTTAMRFTMADGDMLLTATTEEIDRLGEWLGKNGLTGIYTDIEEDDFIECNNFMFTNGDIDINSDNPLTFIRLLK*
SI60aug11_150mDRAFT_c1011207	SI60aug11_150mDRAFT_10112073	F083344	MITTIKFTSDDLTMLRGVMSCTAKKSVRRPALNGFHINKDHVVGTDGSRLAKFNTPHFDGELXEKGVIIPSIKIPFSIHTVIITIEDDTVTADKYSKQGKTTEVYQIIDANYPLYRNVLADADRGKTAVDKIAFNPMLISEVAKSIKATIIQIEFTFGGELSLIYVNIPELPEFTFGIMPARY*
SI60aug11_150mDRAFT_c1012133	SI60aug11_150mDRAFT_10121331	F016996	KLRSGRDIPSTPQVDKIHKKVVAMTDRNDHSGARIEIAKACGDKKLVQIYNALELAHDNYSGAVGNGAIELRNKFSPVLNKAIERKFGKYADVIQDAL*
SI60aug11_150mDRAFT_c1012477	SI60aug11_150mDRAFT_10124771	F066454	MSIRLDVLILINSGVTDRSEIMEKLGVNIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVSRSELINLWNELTDYYLPYEGDKEFTGRRGLSSL*
SI60aug11_150mDRAFT_c1012843	SI60aug11_150mDRAFT_10128431	F023366	IEQTSTGTVNMDVNGASFTADIDQDNASTINLHHDGASADYVILQTGGSGDILTLTVNGASANVDIIQRD*
SI60aug11_150mDRAFT_c1013058	SI60aug11_150mDRAFT_10130583	F016996	MHKLRSGRDIPSTPQVDKIHKKVVAMTDRNDHSGARIEIAKACGDKQLVQIFSTLELIHDKYSGAVGNQSIELRGKMMNPLNKAIERKFGKYADVIQDAL*
SI60aug11_150mDRAFT_c1013971	SI60aug11_150mDRAFT_10139711	F027418	EELIIYNNDLNLDNLPNSIKKIYIENYKKELNNLPNSIEYLELKNYELKIKKIPKKLKTVKCDKNYKYINDFKDYEVIYY*
SI60aug11_150mDRAFT_c1014749	SI60aug11_150mDRAFT_10147491	F020253	MGKRSIPGIITKKGQPKVKKNMSHSTFTAKRHPNSK
SI60aug11_150mDRAFT_c1016258	SI60aug11_150mDRAFT_10162581	F070021	FMTIIKWISVLSLWALIGLVVHNQFDPNTVFGSVMGSAFIFIWFGVLIIGIFIRQKLKNK
SI60aug11_150mDRAFT_c1016273	SI60aug11_150mDRAFT_10162731	F043616	MAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNKSLVSLIECYYIIESIGSTEGKLTISAAVDAEYDEQAEAAGTQV
SI60aug11_150mDRAFT_c1017241	SI60aug11_150mDRAFT_10172412	F017149	YNGGFPRNVTDNKQFDGWKQGNEKYKSAKDVVGYWNFDNVVGDMVIDKSGNDNHAKIHGALQKEKELRIGSLALIPNRRDGKFTCLEHEENGWSQTKFTHWETRENQLRFFNKVRRGLSSIKEDGLSSLKYEISHNEEFLDKHEFISVI*
SI60aug11_150mDRAFT_c1017736	SI60aug11_150mDRAFT_10177363	F048788	MKNNYWIVDEWLIFKPEFNEELINYYDIINKYKKIMFSNYDNSLIAIETNNKYKEKYHNNYIRDIFN
SI60aug11_150mDRAFT_c1018666	SI60aug11_150mDRAFT_10186663	F055790	GYINYAGGGNHIGAIGMGAAAGNSSNVLGDVSVTTVGVAAADTYMIGIEIGKMEGFELPNFMKNGQLGYNHNAAGFGDSY*
SI60aug11_150mDRAFT_c1019326	SI60aug11_150mDRAFT_10193261	F018617	MFKLMYNTCMNNKRISKKDIENDLIRIFEKYPKSLEKAISICFNLILDCFVVIYGEKKTTKLLDDAKKSVNDGNHTQKQRKPRKTTKRSQ
SI60aug11_150mDRAFT_c1019388	SI60aug11_150mDRAFT_10193882	F049290	RMSYVDNNNFYIYNLGDIIDDNLKDHPMGKTYNFATAVYDSCIVIQSIKSILDSKNVKYEFLQSMKHNFGHGNFKMRGDVKQELDYCLNLFKYPVMENWCYENYDFEKEKITWQDNGSRDGHPPMKHNFDYVKEFFPQYITDKVIEYYNINQEKFTDESEMKQENIYRGLKKEFLKNEKIIIN*
SI60aug11_150mDRAFT_c1020291	SI60aug11_150mDRAFT_10202912	F063751	SNFHSTSETLIKPTTPPEGTKSGGIDPTPEPGSKEMGSASGYRQVQKGGQSIFAKNEKLWGKWVDHRIGGRVDSREWKGNKLVDLLPKGKK*
SI60aug11_150mDRAFT_c1022928	SI60aug11_150mDRAFT_10229281	F078811	GDGEILLENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA*
SI60aug11_150mDRAFT_c1023061	SI60aug11_150mDRAFT_10230611	F078399	MENNYWVVDGWLIFKPEFDEKLDEYYDVINKYNKIMFSNYNDPLIAIKTNN
SI60aug11_150mDRAFT_c1023207	SI60aug11_150mDRAFT_10232072	F075397	MKYWHKRVEVVSFFDLDQENQAAEWKDDDNADEFAFLIAENGEYWNLDLFMRTESGRYDGVMGLTNTSAIGIVLSCSGESAVIQCFS*
SI60aug11_150mDRAFT_c1023878	SI60aug11_150mDRAFT_10238781	F050662	EKIQVNYTDIRNKLAEQKQLLLAYKEYYESEEPEVTE*
SI60aug11_150mDRAFT_c1026110	SI60aug11_150mDRAFT_10261103	F076496	ASIKRSKEAQDFIDANPDKFRVVSPEETAKTLQKQSGGYFKGQSVMGPSKKKGKSS*
SI60aug11_150mDRAFT_c1027810	SI60aug11_150mDRAFT_10278101	F024583	RTMKTIIIALLVLCFTATVGNTNENNIINKVTTHISNEIQDIKEFQKDNWEKGKIQTANNIAMIKSWFVKN*
SI60aug11_150mDRAFT_c1028753	SI60aug11_150mDRAFT_10287533	F053554	MKIGIDYSLSSPGVCVNTSEGEFRYEDCTFYFLTNTKKYNDTFKVITAPVNMRSEAVKFIGSPHQLYTNEPERYSQIADWVVGIIKSYGDATTGSNRIKP
SI60aug11_150mDRAFT_c1031351	SI60aug11_150mDRAFT_10313511	F038690	MALKASKKRLNLFTSNFSLTYFISFMLLTILIMFMDSRYDYLKQIRKDFSVITSPIIIFTNDTINFFENFQSLSXSKISLEEEIDQLNIKINHLAIENQIRNFLVVENKNLREANLFSKNQELKKIFPAEIIKPMIRGKNKIITINKGSKDG
SI60aug11_150mDRAFT_c1031390	SI60aug11_150mDRAFT_10313901	F084269	MFRLKSKKQRKNSLIVLRAINRINRYEMSENHLYRAY
SI60aug11_150mDRAFT_c1031830	SI60aug11_150mDRAFT_10318303	F005546	NKSLVSLIECYYLIEGTGILTISAGDETLPLDGKGKYGLRPGQLKFGNDKIFNLTTDSNVKSYLLVTEFRRESNG*
SI60aug11_150mDRAFT_c1032776	SI60aug11_150mDRAFT_10327762	F015932	MMKKDKKNMKLNTPDILWKLDNLADQVCLDNDNIVRWCIDQNDHDDVPDRTARGILQKHGLKVSDLKTLDNDGVLVHRLGDDIPGGMVDDRCLHISTHLVPVLRVLPNILDKVW*
SI60aug11_150mDRAFT_c1033780	SI60aug11_150mDRAFT_10337801	F027418	FNQEFNIPLNVKSLKMEYCNNQYIIDNLHNNIEELKIYSYDLNLDNLPNSIKKINIINYKKELNNLPNSIEYLELINYYLKIKKIPKNLKTIKCDKEYKYIDDFEDYEVIHH*
SI60aug11_150mDRAFT_c1033780	SI60aug11_150mDRAFT_10337802	F048788	MENNYWIVDDLLIFKPEFNEELTDYYDVINKYKKIKFSNYNDPLIAIEIHNLYNDKYIKKYIKNKFN
SI60aug11_150mDRAFT_c1034120	SI60aug11_150mDRAFT_10341201	F079207	MIIKLHARRIDTKMRVAIYAMTEFAMSTLIPSTRLRNNLTINIHLKH
SI60aug11_150mDRAFT_c1034904	SI60aug11_150mDRAFT_10349041	F018621	MKATEKIKLMMRLEKGFQKLDFEELHMIRDTLNKEIEIKSKLFFRGEKL
SI60aug11_150mDRAFT_c1037441	SI60aug11_150mDRAFT_10374412	F048788	MENNYWIVKDWLIFKPEFNEELDEYYSVINKYKKIMFSNYNDPLIAIKTNNEWNREYLNNYFKNIFNQKIDLSNNIN
SI60aug11_150mDRAFT_c1038071	SI60aug11_150mDRAFT_10380711	F090856	KAEKDDLNHWIKQHKNTFNTFKDTKFYKVNPNSIGTSPIDVMIPEWHDCNNLEYITQHDLDKKFKL*
SI60aug11_150mDRAFT_c1040095	SI60aug11_150mDRAFT_10400952	F059474	MAFKAIDRNDTKEFVSSEDPAIDIANSDIEAYKESHDIKHLSFKDGESPTVFHMGTITFMKFAEIKDKHISFDLGSDGQEINTNLFGLTADSLRHSLKKADNLPFPIKIERGRLSDTTMDKLARLGIVEELGNIALNLNGF
SI60aug11_150mDRAFT_c1041196	SI60aug11_150mDRAFT_10411961	F101844	SNLLWDESADALEFGNSFLTITDARTTGTMDVRGLTIDVSNKLDTGSSNDRIGIDVDVIGDVSGYTIRDAVAIRAVSRQSTGAEVTRLNTPIHSVLDMANTASANNSGTTLSGAYGLAIDHDDTIATRTGQPTAFISFGELYVGGTESIETAYLFDIFPEGKTGDATY
SI60aug11_150mDRAFT_c1041718	SI60aug11_150mDRAFT_10417181	F038416	YAEGYVSKIKIVHQTEVSCSRGHPTHYMKIRPVYDTYGYKEEGRVVCEKCGTLYRLMEPTLEE*