3300000178: Pristine groundwater from Oak Ridge Integrated Field Research Center, Tennessee (resequenced)

Overview

Basic Information

• IMG/M Taxon OID: 3300000178
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056648 | Gp0053785 | Ga0010863
• Sample Name: Pristine groundwater from Oak Ridge Integrated Field Research Center, Tennessee (resequenced)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 226623009
• Sequencing Scaffolds: 64
• Novel Protein Genes: 70
• Associated Families: 69

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	15
All Organisms → cellular organisms → Bacteria → Acidobacteria	16
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10
Not Available	7
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → Nostoc punctiforme	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Oak Ridge Integrated Field Research Center, Tennessee, That Are Pristine And Uranium Contaminated
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Oak Ridge Integrated Field Research Center, Tennessee, That Are Pristine And Uranium Contaminated

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Oak Ridge, Tennessee, USA
• Coordinates
  • Lat. (^o): 36.11569
  • Long. (^o): -84.248657
  • Alt. (m): N/A
  • Depth (m): 21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000165	Metagenome / Metatranscriptome	1824	Y
F000555	Metagenome / Metatranscriptome	1028	Y
F001121	Metagenome / Metatranscriptome	771	Y
F001573	Metagenome / Metatranscriptome	669	Y
F001627	Metagenome / Metatranscriptome	661	Y
F002032	Metagenome	601	Y
F002361	Metagenome / Metatranscriptome	567	Y
F002872	Metagenome / Metatranscriptome	524	Y
F003181	Metagenome / Metatranscriptome	502	Y
F003239	Metagenome / Metatranscriptome	498	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
FW301_c1002116	All Organisms → cellular organisms → Bacteria → Proteobacteria	3262
FW301_c1004238	All Organisms → cellular organisms → Bacteria	2031
FW301_c1004939	All Organisms → cellular organisms → Bacteria → Acidobacteria	1827
FW301_c1005532	All Organisms → cellular organisms → Bacteria → Proteobacteria	1681
FW301_c1006526	All Organisms → cellular organisms → Bacteria	1496
FW301_c1006952	All Organisms → cellular organisms → Bacteria	1430
FW301_c1008389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1258
FW301_c1008751	All Organisms → cellular organisms → Bacteria → Acidobacteria	1227
FW301_c1009162	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1191
FW301_c1010521	All Organisms → cellular organisms → Bacteria	1091

Sequences

Scaffold ID	Protein ID	Family	Sequence
FW301_c1001997	FW301_10019978	F003239	DLTAGRFKDGAVARVLAMEFWARGEAPTFEEFARSWTKAKAEEHRLLTPEYAYLTDLKRHRAGGEWKAVRKAKAKSALKTLARVAPV*
FW301_c1002116	FW301_10021162	F064473	MSKDGPATLDDLLKQAKTTNRLLAAQLKAQMSQMDVIRLLSDSGLTAREIGEILGTSGATVAVTQQRLRNKKKKKTEE*
FW301_c1004238	FW301_10042382	F085907	MRTGLVIVAAFLMLCVSAATEAADVTGDWAVTITTAGGKITGKAALKQTGDKVTGQIGPSGDATIAIEGVLTSDKLTLKTRPRPGRTAAFDSCELTVGDEKMSGTIQGGDAGKGTIEFVRSKP*
FW301_c1004939	FW301_10049393	F061174	MSRVRGYCALIAVATLLSSAPFAQAALPHLRGIGEIRDWFNAGKGHVRLILLLSPT*
FW301_c1005532	FW301_10055321	F078679	TTPVAPGNDFGAWETTCRGIPAGLSLVACVHGFVRPTDSFGNLEVAKRVAWLLRASGGGLLLKSSGEGVVPWLGMNFSASRVCFPDGHIFKIIGDAGPGGANTPGWADNDFVDRSLYVAAMDPRLR*
FW301_c1006526	FW301_10065262	F041912	MRNGLMGMRILLIVALASSAVVFAQNGQRRTQGANAGPASSKPFNPHDLSGFWDITNTGLPRGALNETSNNRPQMTPWGLEKFRKTKTGVANALSNGASPNEKDWNDPIRWCDP
FW301_c1006952	FW301_10069522	F000555	VSYRIVAVERSGQWIARAENEETGRPFGIESAGATEHEAVMRLNRWLDWQREHAEALDALQTAERAYHRTIAGSAFANPTEGPTPLELQKESLETVEAARVRLDEVRARKPE*
FW301_c1008389	FW301_10083893	F046722	MKSILYLGCPGSERADTEKILTSAGVSVLWADNVACALAELQKREVPVLVDLSRG
FW301_c1008751	FW301_10087512	F089064	VIRLLVPLAGTSAFFLLSLATVRLLRPADPKRFFFAYAAALVLAAAVMYVRFWPIESMEALVGLVCCLLGQALACFTMWNSFYSLLWGFSGGLMHDLYHHENLRDVDRLVRSYEGADGVDRILARRLPNLAAGGYIDLQDRTLRLRWKGRLIALGTLAAFKTFSLGMGGGVK*
FW301_c1009162	FW301_10091622	F019897	KILLALAARREKQEELARRLLRELKEEFPASPLFAAEYARSMGFPIPSSITR*
FW301_c1010521	FW301_10105211	F101462	MGVKGGWFRRRPSDEEMREELEAHLAMRAEHDGVDDAAARRRLGNLLHTRESMRRVWIAEWWDAL
FW301_c1011155	FW301_10111554	F019399	VLIAELLLAITQMQLMVGILLCAALFAGLLGPYLWKEIRGGKVELGPRLPIGPGDTHPGRPGNPAPGQPEAQADPYDPEARR*
FW301_c1012155	FW301_10121552	F009172	MPNKSKNAPNAQPNRGTKKPYEKPAVSSEPIYETLALACGKLSGQGGACNAAPRRS*
FW301_c1013196	FW301_10131962	F072190	REGNLPGFLRVRADERERLLNRLRRSSELPDKTPAIEMSPQFGIASIAFSHAVTDVANVWFHIWKTVNGDLR*
FW301_c1014605	FW301_10146052	F010002	ALRINGKDIKDAVIKTDQFEMRILEFVPDHLKATVKGTSGEAFNFVPRFVSVVYPDKTIDAKDTGILTVGKDKTIEAVIQFQERLHIETFLMMELRYARKKLATITVD*
FW301_c1014942	FW301_10149421	F023172	EAVARGDISAQDLISGEVRLADLPEAFRKMKSQRGEIKLVVRP*
FW301_c1016178	FW301_10161782	F001573	MGIRRAFLVLFFAVLVGRVPHLAAHPKPGPSVALTNAIATLSQEALIEEDTSALLAELIQKEYGTXEYGTHESELLWATKHSLGWGEITTLAYIQATTGKTFAQMITENARQDFWSYADNAGMNCEKMARSLESFLKRAERERNSRIFDRLRAGRKVHPLPDLGSGFGLXQEALDFRRIEDSPRLTKIHEVPGVLAKGEK*
FW301_c1019282	FW301_10192821	F002361	MMKRLLSYEYSMTVKQALSVTLDADNVTWLKGRMGAGGARSVSDLLDQIVTAARKAGGVGPSRSVVGTVDIDSSDPLLKSADAAVQALYARSLGR
FW301_c1019571	FW301_10195712	F004965	DLGKLKNEYGFRAAKHPMVGNPCSHTVFDPLKTAVLPGSNVWVRGAIVQGSDLRPPLGVEINIRGKNILAVRAE*
FW301_c1020258	FW301_10202581	F026105	NGNFLFRNEYEISADVKSFFEEQDPALDRMARDFASRLVAAITENF*
FW301_c1021589	FW301_10215892	F041513	MRKQVLPSVSELEELDRFYREGGLRRMASPHIHYHEFECPHPGCTHHMEWIDFQLELFGDPEGVYKPLVRSWWEGPGFVGRCPICARWIHFTTLRMEALSEQEA
FW301_c1022854	FW301_10228542	F028866	MTAATELASQSFVLLRLGERRFAISARQIAELVPLSRIFRFPHRT
FW301_c1023143	FW301_10231432	F009982	LYRFDGEGNRRASYRIYTPEGARLDATSILIEPNRLLIGSDPLGIYEFERPDKRGGENPPP*
FW301_c1023622	FW301_10236222	F037493	LTGIKCPHCRSSLALDRIGVHFQKFCSAIPTPAAREASMKKYNQLFTQLQSHSRGEITIEELQDAADKLFVADK*
FW301_c1024480	FW301_10244801	F006876	MSDMEIKLNHILDEHQHESGLHMIGGQRRLVDRLVKFIEEDVKVEAKSAPSPTSRDC*
FW301_c1025594	FW301_10255941	F012383	MPTDMREVRLPAELCQSVERRYAERFGNLEQFLVFLMQELMRDDAAQMDRAELQVIEQRLKDLGYV*
FW301_c1025741	FW301_10257412	F031410	MCYLDARGEPLSATPSRPDTVRLAGSTFSQRVIVGAIILLFCYYAAGVVITLLLSVLLAYFLDPAVEFLERLRLPR
FW301_c1026999	FW301_10269992	F018954	LRMLDEVDPAIASDVAAAAAGRRVPVLSGYVGRIG*
FW301_c1028257	FW301_10282571	F008654	MAAYNGMLNNSAYPNPPVALPTFKAGIDQYSALIVDAEDGGKKAITALNKQRVEVIKMYTLLGHYVETVCNGDLATFTTSGFTQAAVKTKTAPVPLTEAKFRSIDRGPNSGDAVVKPENQTGAIAFDVRYALEGAGGVLGSWTIVTITRPKKVTISGLTLLGIYQFQIRALGVLGYTDWM
FW301_c1029111	FW301_10291113	F065223	TISSTDKFDEKIVKATDAEIDKFVTPLSRKTVTMDTRPGPQSISIVGQTLIITRGTMTTRIDTPGTRIATVSNFRFWEESQGVPLKKAN*
FW301_c1030027	FW301_10300272	F014676	SFAAPAAVAVVLMITLTAASQYGVSMRMARLRTEMGSIERTPQESPLRVEFDRLHKMSVKLESGVLLAGLAALYFLTREVSR*
FW301_c1030217	FW301_10302171	F032725	MPRIRTSALALCGIVSLASCLLLAQTQRPGEYPRGEKPSPMMSFFVTSVPVGDGGNLGGL
FW301_c1030655	FW301_10306551	F019856	QASPAPESDSVFLWEPAQFWNHQPFEIWLRASVMFPSALTISTSGAVGEQPFQPVTGDWNWFLELHDDSNPKPPCAKELANIALDVKTSDPLQTLVVGTQNVRIAMRIMGGDCCAPNIVWVDGPSLRLDHWYEMLLHIKWDPSSGIVEWFVDDLNNPYYSKRNISTLYTRPAGFLSPSFTSLTLGNYRWHADWNSTIYLGPLLVGSTQSAVLNAF*
FW301_c1032181	FW301_10321811	F078434	SFSSIPSTSQINAAAANFPAGLPLDFYLADELIGCPSAYSALKTMGTNAHAANRSVKTMMTLNTPDPNLFNEGDGRSAIDHWVLLDSVQQWPALPFTGGGDLWSYTSCNTGFGNTPEWLVDYPPINERIQAGFLNWTQGATGILYYRADGWT
FW301_c1032388	FW301_10323882	F016328	MMESSPFTFRRAAVWIGRLVLAGVFIYAGYAKLFLPTIH
FW301_c1032604	FW301_10326041	F015645	MAIDIGLSRSARSSILAHLRTLRANLAQARDALMHFKDDRVDRDKLEPAARRVDDLMNMFVSTVRDPVQGSLWVTEIQSGIEQVTNPKAAEALREARLEITALLEAMGTERKGTYSGIN*
FW301_c1036453	FW301_10364532	F089086	MSPNLRLRNRLGVVLHMVMAFVIMILLAQLWLFTVSLDAMESREASMQIAIVAMAFSFLGCASVWALIRLFLRVEERH*
FW301_c1037029	FW301_10370291	F014403	SLALDPRLGGLFVEQWDNGGQVIASVTGWAQDEYLQLTGSFHMGVGVGVATFDLTESGAGTLVRFSFRAIGVVDAEVAGAMSRAWAELVGTRLKGLVETGTRLGI
FW301_c1037029	FW301_10370292	F015913	MPTEVASTEYGVIIHYDEWNALELKWLPTTKDATEAEARNTMALFAAETEQLKPRSLIVDTT
FW301_c1037390	FW301_10373901	F003558	SVQHAAPSGLRRLRPERSYRPCLHPGICVRGANIVEARVKATSIHVGDLIHCRSKYYRDGLQLPEELGLVIEIKRSNFKILYANDKRGWLPREALVRARPELEYKTFLEKLYYMIKKVHAHECELVSTEGTHLLTLRIDRIDHELVDDLRKFLGDGFISLTVVPEGMAFMQVEIRFRDPAARSIEL*
FW301_c1039016	FW301_10390162	F014640	QQVLQSKRSLAFSAFQSALEARLKQEGKLKIMPDRLKGFGNFQEPLT*
FW301_c1039631	FW301_10396311	F003181	MVQVEFRSFGSVGSKMKFDQGPGGEIRVLDSGYTDQVLLDRVSEEFLRIRAVVYNSLNDLNKLFLVDRALYTNTPDFPIYFEFTPQNMAAMKTPLVLTQVKLYFVEKMWGLSTLRLMK*
FW301_c1040288	FW301_10402881	F002032	MPDNTITDTHAKGETPYAIVKLTPSDLEPKDWAFLREWANRLGVSLEVLLHRILVAAVIGQLYAEKIPEI*
FW301_c1040400	FW301_10404002	F062627	MFGLNGRQKFFLLIFLLILIAATQYGPAYWAAFQFNDYIRQEVRFAVSSKKTTEAIRTDIVQKASELGITVTKRDIRITRRGPSFQLDLEYHWPINFRIYKHE
FW301_c1040441	FW301_10404412	F005385	KKRSKRAQSSKFRIRVRYKYHYYKWIQTPDYGSFKDIYEKYKDKGYSFWCADLPPEFSSQDGTWTGYRLDGDKTHTASTLKRYGRHKAWIDPVYKFEGKPVILVYNAT*
FW301_c1040930	FW301_10409302	F005383	MKGTKQNIRYLGFEAIEDGRRFDFSITRATEESTRVSLVIPALMFTGVNRISFQESAKICYEKLRVVLEGAENKMPLRILLTGDDIAQFRHVPRGRARPTQA*
FW301_c1041254	FW301_10412542	F051517	VSGLDALIDRTKSAGYRFLSVGAKPIQRAFGRFVFAIDPDAVLVEFVEPVAAAR*
FW301_c1041762	FW301_10417622	F010360	MTQTASPVSKQRTERRISVHLPMTVRGLDLRGFFFEESTSSENLCRSGVAFRIRFDVQPGSDLEIRIPHSQCASRRAEAESTRVHRATDPHICEV*
FW301_c1041943	FW301_10419432	F023915	FTQVADKLPTTQIIQAFAESQNGNGGYYVAVAGSGMNNWKLKAFTGGGTEITTGAYPASVTTDIVQLAITGRKLL*
FW301_c1042901	FW301_10429011	F017169	SGNLFFAAGTEDFARVDQIGRFASQTYGGGLQFQITARQNVSGYASYQKRTQGRTDKSFGMSYGIRF*
FW301_c1042901	FW301_10429012	F004243	MESVFEKLWRLGPAAFVAKAILAALVADGLLLAFILLRRAYRRRYFAKRDARVFELRQNWDALISGEIPYETWRNIRFDRQIVETIALDAFEAAGPEESARLLKFLRTSGLIEKRIFEARELTNWRRMRA
FW301_c1042928	FW301_10429282	F040653	VVRNLVLLPLIVLLAQKPVKKPDVHPDFQYGSYPTSRQLDELLKDDLAREVLVAYHEGWSVA
FW301_c1043076	FW301_10430762	F006342	MLQFLRSRQWIVGRRLALIGIILFLGYRTYGGTIAAWLSGPNPKRDIAITRAEFRPEIPGIKPAWIIGFRNESRRYTYEQIQLEATYMDDKGAVLEMDKLVVKQKLPPGGEKVIGSVDYKSRGAATRGTLAVVGAQGVR*
FW301_c1044430	FW301_10444302	F015665	MTTAGSLDAPIEIFGGLVTDMSPADLPHGVSPDCQDVVFSEGGVKTRPGLQPLFGPLAGNPTVNY
FW301_c1045123	FW301_10451231	F001121	VQVQNPDGTRSGSVTLVVVSAAGTEDVIALTTASPAASGMDIVVVEPTTAGVSVPGGSVDLDVAALGVFSTASNSCTLAGNPVFVQRPALGTAAFDLCIFSASGLDTSMNYIVSGAGDVSVIAKQPAGLGIIHLTLQVSSTARPGARTLFIENTNLDKTAASGAL
FW301_c1046557	FW301_10465572	F070290	GKIQQGVRIRWIVYRGVGKVRFDPDIMAGRVQGKPATLPTKVSFTAPGAYRLRAIASDGQAFSTYDVDVTVK*
FW301_c1047076	FW301_10470761	F002872	MTYRRTALFALVAVAALTQILVAQRGQRNQVPAAPTANSLPFDPHDISGIWRNPGGFDPIIGTNRPPMTDWGKEKWSKTRASARNTPLAFGFYQDQKD
FW301_c1047076	FW301_10470762	F005951	QLLVSFVPAKGDRTFGTCTQFVFVANGKRLGGNGRCGMGAEAVDMNTLPVKPGYTAVEVKMPKDDRTRPESEQEK*
FW301_c1047457	FW301_10474571	F010901	MKRRTWILVALFVFMMLIGPRPANAQQRYIVVSTGGLSSVLNLCSLLQCQVQGALDGTVGQTFLVTSSNNLLGNLVNGTLTLTQSLPGIVSVETDRLLPVPQRPLPSIPAGLYDTAPVNFYGTVVWHGYAAQPA
FW301_c1047725	FW301_10477252	F003558	PGICVRGANIVEARVKATSIHVGDLIHCRSKYYRDGLQLPEELGLVIEIKRSNFKILYANDKRGWLPREALVRARPELEYKTFLEKLYYMIKKVHAHECELVSTEGTHLLTLRIDRIDHELVDDLRKFLGDGFISLTVVPEGMAFMQVEIRFRDPAARSIEL*
FW301_c1047913	FW301_10479132	F024517	VIPIPTRREITYPLSFRVPLSQVEEIDAAVVRERRKRRSDLLEAIWEMAWNNYRKSGSLQAYAEGRHRAKRTKRVSEELQDQLYTALETILQRAPSAVIEEVARKLTNWAGKYGEEK*
FW301_c1048446	FW301_10484462	F008792	MNAKLNQLLQQIAHIQRMERGKLSIMREGPDGTHFKLXAWEXGKNVSRHVSSDQAPLVQEAIDGYHKFQELIDQYAQQVIDETRAELAGHSKKKKYRLCRKSSWPKTRKSSS*
FW301_c1049122	FW301_10491221	F012924	MADEENDTPEQPQRLFTLGEAERTRKELEPVLLEAMDCRKRLEGLDENLSAVSTRIMMMGGVTVPYEKLTRLRVEHRHLAEALK
FW301_c1049440	FW301_10494401	F066194	PEDCARVILKAIEDRRPKVRYGVTPLATLTRWGRRLLSDHAMDTWLCRRF
FW301_c1051405	FW301_10514052	F000165	MNILKQPPMIEDLRNHSAEQLAELRMLLETGAPARPDPRRPHFFEVVGDSNVYYIFKYPAGTKVLLLGVWERDPVAELAACSCPAA*
FW301_c1053205	FW301_10532051	F009028	MSRKLTVILLAMLVLVGAMGLKTVVVTHGDGSVMMANGGGPVPPTPWKNGGGPVPP
FW301_c1054950	FW301_10549501	F015108	GIIPTPRPVISAAFGGRDKKTLFVLARGARDATGTEVANAAQVYAIPLVAQGYKGRAK*
FW301_c1055666	FW301_10556661	F083135	MLGIIRAMLGSGATRSHRVLRRLAVLAVVLMAFFAGMLVERLRLDAKREDMLRRYDHVLQQYRDQQMRSEKASAR*
FW301_c1056209	FW301_10562091	F022947	PLALKILEGSVLPGDHIVVDRDSRSDAMRFDRLPAKQAVAAVRS*
FW301_c1056496	FW301_10564961	F001627	ALRQTLRQLSDSGADAPRREARNIILNYVRCLDSTNPSARRGVAAGVGEMTAILESLWPNQLPEDLSRGALKALAKETIPETAALLGAFLETLGRIAVSRRDFAAFEAILTGLETAPRDAEHEHMAALAQRLVSQDRWLLLVDAALANRPLDPVLPRLLQRDPER