Sample 3300000134

Overview

Basic Information
IMG/M Taxon OID	3300000134 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063447 \| Gp0053439 \| Ga0026116
Sample Name	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 07_21m
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	98592268
Sequencing Scaffolds	16
Novel Protein Genes	19
Associated Families	19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Oleidesulfovibrio → Oleidesulfovibrio alaskensis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	KBA site, Vaertahamnen, Baltic Sea, Sweden
Coordinates	Lat. (^o)	59.363333	Long. (^o)	18.119167	Alt. (m)	N/A	Depth (m)	21
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013428	Metagenome / Metatranscriptome	271	Y
F015324	Metagenome / Metatranscriptome	255	Y
F018541	Metagenome / Metatranscriptome	234	Y
F029478	Metagenome / Metatranscriptome	188	Y
F030099	Metagenome	186	N
F035835	Metagenome / Metatranscriptome	171	Y
F040160	Metagenome	162	N
F041807	Metagenome / Metatranscriptome	159	N
F045540	Metagenome	152	Y
F049642	Metagenome / Metatranscriptome	146	N

Scaffold	Taxonomy	Length	IMG/M Link
BS_KBA_SWE07_21mDRAFT_c1000103	Not Available	10682	Open in IMG/M
BS_KBA_SWE07_21mDRAFT_c1000108	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	10578	Open in IMG/M
BS_KBA_SWE07_21mDRAFT_c1001006	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria	3617	Open in IMG/M
BS_KBA_SWE07_21mDRAFT_c1001215	All Organisms → Viruses → Predicted Viral	3305	Open in IMG/M
BS_KBA_SWE07_21mDRAFT_c1001771	All Organisms → cellular organisms → Bacteria	2761	Open in IMG/M
BS_KBA_SWE07_21mDRAFT_c1003445	All Organisms → cellular organisms → Bacteria	1967	Open in IMG/M
BS_KBA_SWE07_21mDRAFT_c1003596	All Organisms → Viruses	1929	Open in IMG/M
BS_KBA_SWE07_21mDRAFT_c1004525	All Organisms → cellular organisms → Bacteria → Proteobacteria	1721	Open in IMG/M
BS_KBA_SWE07_21mDRAFT_c1008481	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Oleidesulfovibrio → Oleidesulfovibrio alaskensis	1222	Open in IMG/M
BS_KBA_SWE07_21mDRAFT_c1019963	Not Available	746	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

BS_KBA_SWE07_21mDRAFT_c1000103

Not Available

10682

Open in IMG/M

BS_KBA_SWE07_21mDRAFT_c1000108

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

10578

Open in IMG/M

BS_KBA_SWE07_21mDRAFT_c1001006

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria

3617

Open in IMG/M

BS_KBA_SWE07_21mDRAFT_c1001215

All Organisms → Viruses → Predicted Viral

3305

Open in IMG/M

BS_KBA_SWE07_21mDRAFT_c1001771

All Organisms → cellular organisms → Bacteria

2761

Open in IMG/M

BS_KBA_SWE07_21mDRAFT_c1003445

All Organisms → cellular organisms → Bacteria

1967

Open in IMG/M

BS_KBA_SWE07_21mDRAFT_c1003596

All Organisms → Viruses

1929

Open in IMG/M

BS_KBA_SWE07_21mDRAFT_c1004525

All Organisms → cellular organisms → Bacteria → Proteobacteria

1721

Open in IMG/M

BS_KBA_SWE07_21mDRAFT_c1008481

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Oleidesulfovibrio → Oleidesulfovibrio alaskensis

1222

Open in IMG/M

BS_KBA_SWE07_21mDRAFT_c1019963

Not Available

746

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
BS_KBA_SWE07_21mDRAFT_c1000103	BS_KBA_SWE07_21mDRAFT_10001032	F074886	MPKIPRNFIQEFPYGISIEDSLNKGMKYLNADPNYITTWKDIIFTPVENLIHHQVFVFSEGKDMLIGFLVSQQATFLPDFISATIQLFGGVYTIDDTTNSIFIQEFIYYSILFLIGLGSARLAISMWLIINPYTMPWFLLLTATEWFMDSFAGIFPAVFGIEMTGSIVLGLLGSLAVYVKNLVLTMPYLPSEAIKQTIGIHEVYTFGGIPILWKIFSVPDKLREEWYKSTPYLIENLIKYYGDEGVEFVPSRILKEFYNNTPVADYTYHFAFVFSEFKSTFYQLEIHNNLLAFVFNPNIFESFNSHQFYNISNIL*
BS_KBA_SWE07_21mDRAFT_c1000108	BS_KBA_SWE07_21mDRAFT_100010810	F049642	VKIIVVISGFTQKNYQSTGSKQLWRELRLLKDLCAGEDALIQLKEWDTDWKRYARYINSLEPSEVLICCYXWGGGHGMPQLSKRLQCDVSVVACDPVYHSPTILGRWWALFDRKIKLDKNVTVVGWVSQRGGHLDGDKLVGGKSICKELTYNYSHTEIDNSPEYHQMAVLAATEYLTKI*
BS_KBA_SWE07_21mDRAFT_c1001006	BS_KBA_SWE07_21mDRAFT_10010063	F082695	LFFVLRSFESETGDETDVVKWAHKLMNKSVANRTITKQEAMCELGQLPMVICSEGIETVSITGSTXCSNETSTILSQYKKRPDTQEHLSLHEFFHTKKNKRLPATRSQREIVPHYVGGSGQPVYPLTKQSISYARSEILKHMPWSQKNPLPNDCDWVALFEDFLNDARCPHSVTIGYERAKLRHELRKKGIEEACQPDTEHSNPTDDLDDDEIGDVIAISESMGYTTDEMDNLEKSGFFIGKDYEWWKRIHTVSCSFMIEMKSSPNEIWIFQNF*
BS_KBA_SWE07_21mDRAFT_c1001215	BS_KBA_SWE07_21mDRAFT_10012153	F030099	MTESEHETCTTIAEQLGKPYTPMAIGKLRASVCLPADLDGKYILPTGVLKIMAQIKGEIDIIEEAAPEIVTVKVIHHQTGNTRVIFAEDPDTRRKIRVSVPAKWKDIINMAGKRLKVNKVYSDGVAYYRYPAK*
BS_KBA_SWE07_21mDRAFT_c1001771	BS_KBA_SWE07_21mDRAFT_10017713	F045540	MLRYIFTLATLLDSKSNCKKHYSPEIVISDLFDENLNEIDFIKSLSELELIYGFEISEELYDRKDLTLGEFAEELLQLPIISDELYLEFFDIKMESMKLTKRYIELEAKTDEDSLREMHMINEKFEELTDRLNVVLGNILVN*
BS_KBA_SWE07_21mDRAFT_c1003445	BS_KBA_SWE07_21mDRAFT_10034452	F018541	MYSPKMRSFWVDFPVTDDQYAKLDLRWRRRDNFYEIKNPPPAGIRVRSFCTFGGEDYKIISLEVRGDIDAYHEVIKVMGSWIVDSLGAY*
BS_KBA_SWE07_21mDRAFT_c1003596	BS_KBA_SWE07_21mDRAFT_10035963	F035835	MKTDKTTGITEGAMRTLLRSALRPIWRRCSRKTFINSVRYQATNPKTGRQWNVIDCIDCKRVMGVSEKERRPLKNGRLSKKPRSVYEVHHISGVTSLGDIRETLGEHFHSLIYGKMAILCVACHAKETAEQTIERNKKKEFTT*
BS_KBA_SWE07_21mDRAFT_c1004525	BS_KBA_SWE07_21mDRAFT_10045253	F101438	MSDRTVIRQGEIMLRQIFSASLFVWYSTSAWADGPVDKPVSPSARFEQILDFRNNASLVRQPQQVLDLADAMTDPEFLVAAMMMSANPEIWLKALERAGAPGVPKNLSQMATPEMLADWFYSSIDPQFQQAIVTRMLDPKKPQRWMQAMSNPRFYMHALAIMNPATPMQWMKVTADGRMIQPMQAWFDPKTYLNWMRLPMPS
BS_KBA_SWE07_21mDRAFT_c1008481	BS_KBA_SWE07_21mDRAFT_10084812	F060457	MPKDNADPRTSSSDIGIFLSTIFHIASIACVPFLVNGTVNGNIYTCGLLFVWIIYYSFRLAKSRKLLGLAFFGMTLSAMVLGIYNFGLMSQYKNAKLYLGEEKEFCRETTYETLLLKYETEKSMISASFRICLDKQHVQPETCIKEVNQRTSLNEVMFGNRLLRLSNCANSLTTKEKSLDRLKNKPWVKFWLSLL*
BS_KBA_SWE07_21mDRAFT_c1009474	BS_KBA_SWE07_21mDRAFT_10094741	F029478	IRVAAALLLSQVLSGCVSLRIEKMQEGVDVAPPPVEFIQKKTLLEEVLAGYGAPTDLVDMNGDFALHYRRALYRGLRVSMGIPLKSVLLPNPSMEAKGNLLRYDTAVFIFTADGVLKDMKYEKGTSRSLWEDYWR*
BS_KBA_SWE07_21mDRAFT_c1015327	BS_KBA_SWE07_21mDRAFT_10153271	F104469	KSLGNHDQALPDADDNASFVFDKDDQSISSHGSVVVNSCCDTSFDGTTKIPTDENDYACFTTSQKCVTSLMYLLDDMECPDYAFQSIMEWARNCFEAGFDFNPRSRTRLANLKWMYNSLHNSEQLLPSVVTIQLPDPLPTVKSMDVICYDFVPQLLSILQNKEMMSVNNLVLDPMNPLSMYKPSDNRLGESLSGSVYQSMYQRLVTNPSKQFLCPLICYTDGTQVDALSRFSVEPFLFTPAVLSHAARCKAEAWRPFGYVQHLRCHETKLDGGAKARNYHAQLQAMLQGL
BS_KBA_SWE07_21mDRAFT_c1019963	BS_KBA_SWE07_21mDRAFT_10199632	F040160	KVKSLCAAISSHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIEAIGTEEQGAFKKTKAVGKYKEPTDSTIDPDLDEI*
BS_KBA_SWE07_21mDRAFT_c1021914	BS_KBA_SWE07_21mDRAFT_10219142	F105200	VPDTFDRELEQLLQYSETPQPEAFVMDVMRGVRREQRTRKIILWAFGLIGALFGLSGAXMLXGPVSGLFTFSLALPAMETMQVTLFIVGAAAFYLWFMNDDFSLGN*
BS_KBA_SWE07_21mDRAFT_c1024494	BS_KBA_SWE07_21mDRAFT_10244941	F041807	MARLELTLNFPKSFHIKTFNVKSEKKLSPLAKLILQNVQFKHFYYVRDD
BS_KBA_SWE07_21mDRAFT_c1027979	BS_KBA_SWE07_21mDRAFT_10279792	F013428	VSGNDVANGPTDQQRRGIRRTTILLVLVALAIYVAFIASGVMKAQH*
BS_KBA_SWE07_21mDRAFT_c1030452	BS_KBA_SWE07_21mDRAFT_10304522	F015324	MALVNQVQKRVKMPKWDIVKFQILTHCYVNHITMSDSDLNCLTLLSFNQPIELTHFCYDASAED
BS_KBA_SWE07_21mDRAFT_c1032998	BS_KBA_SWE07_21mDRAFT_10329981	F082378	LKEQERKRFTDVQIQMQNLAGETGEYLIEFSSEDPDNAQTIGTTTTFLGGEMLAPSTVGEAETANIRARLGGIRGYTGTVILTRTEGSPKIHSTRISASITNRQIISQK*
BS_KBA_SWE07_21mDRAFT_c1037135	BS_KBA_SWE07_21mDRAFT_10371352	F098776	MSATHFDFTTLKFFLFRNQSNRLSIPPCHILILFWCALVILYDVTGLS
BS_KBA_SWE07_21mDRAFT_c1039713	BS_KBA_SWE07_21mDRAFT_10397131	F100438	QAKSLKLEKIMNEKMSKRRIQITDLQKQEIEEKQERRLLIRLHIFYLILLINL*

Scaffold ID

Protein ID

Family

Sequence

BS_KBA_SWE07_21mDRAFT_c1000103

BS_KBA_SWE07_21mDRAFT_10001032

F074886

MPKIPRNFIQEFPYGISIEDSLNKGMKYLNADPNYITTWKDIIFTPVENLIHHQVFVFSEGKDMLIGFLVSQQATFLPDFISATIQLFGGVYTIDDTTNSIFIQEFIYYSILFLIGLGSARLAISMWLIINPYTMPWFLLLTATEWFMDSFAGIFPAVFGIEMTGSIVLGLLGSLAVYVKNLVLTMPYLPSEAIKQTIGIHEVYTFGGIPILWKIFSVPDKLREEWYKSTPYLIENLIKYYGDEGVEFVPSRILKEFYNNTPVADYTYHFAFVFSEFKSTFYQLEIHNNLLAFVFNPNIFESFNSHQFYNISNIL*

BS_KBA_SWE07_21mDRAFT_c1000108

BS_KBA_SWE07_21mDRAFT_100010810

F049642

VKIIVVISGFTQKNYQSTGSKQLWRELRLLKDLCAGEDALIQLKEWDTDWKRYARYINSLEPSEVLICCYXWGGGHGMPQLSKRLQCDVSVVACDPVYHSPTILGRWWALFDRKIKLDKNVTVVGWVSQRGGHLDGDKLVGGKSICKELTYNYSHTEIDNSPEYHQMAVLAATEYLTKI*

BS_KBA_SWE07_21mDRAFT_c1001006

BS_KBA_SWE07_21mDRAFT_10010063

F082695

LFFVLRSFESETGDETDVVKWAHKLMNKSVANRTITKQEAMCELGQLPMVICSEGIETVSITGSTXCSNETSTILSQYKKRPDTQEHLSLHEFFHTKKNKRLPATRSQREIVPHYVGGSGQPVYPLTKQSISYARSEILKHMPWSQKNPLPNDCDWVALFEDFLNDARCPHSVTIGYERAKLRHELRKKGIEEACQPDTEHSNPTDDLDDDEIGDVIAISESMGYTTDEMDNLEKSGFFIGKDYEWWKRIHTVSCSFMIEMKSSPNEIWIFQNF*

BS_KBA_SWE07_21mDRAFT_c1001215

BS_KBA_SWE07_21mDRAFT_10012153

F030099

MTESEHETCTTIAEQLGKPYTPMAIGKLRASVCLPADLDGKYILPTGVLKIMAQIKGEIDIIEEAAPEIVTVKVIHHQTGNTRVIFAEDPDTRRKIRVSVPAKWKDIINMAGKRLKVNKVYSDGVAYYRYPAK*

BS_KBA_SWE07_21mDRAFT_c1001771

BS_KBA_SWE07_21mDRAFT_10017713

F045540

MLRYIFTLATLLDSKSNCKKHYSPEIVISDLFDENLNEIDFIKSLSELELIYGFEISEELYDRKDLTLGEFAEELLQLPIISDELYLEFFDIKMESMKLTKRYIELEAKTDEDSLREMHMINEKFEELTDRLNVVLGNILVN*

BS_KBA_SWE07_21mDRAFT_c1003445

BS_KBA_SWE07_21mDRAFT_10034452

F018541

MYSPKMRSFWVDFPVTDDQYAKLDLRWRRRDNFYEIKNPPPAGIRVRSFCTFGGEDYKIISLEVRGDIDAYHEVIKVMGSWIVDSLGAY*

BS_KBA_SWE07_21mDRAFT_c1003596

BS_KBA_SWE07_21mDRAFT_10035963

F035835

MKTDKTTGITEGAMRTLLRSALRPIWRRCSRKTFINSVRYQATNPKTGRQWNVIDCIDCKRVMGVSEKERRPLKNGRLSKKPRSVYEVHHISGVTSLGDIRETLGEHFHSLIYGKMAILCVACHAKETAEQTIERNKKKEFTT*

BS_KBA_SWE07_21mDRAFT_c1004525

BS_KBA_SWE07_21mDRAFT_10045253

F101438

MSDRTVIRQGEIMLRQIFSASLFVWYSTSAWADGPVDKPVSPSARFEQILDFRNNASLVRQPQQVLDLADAMTDPEFLVAAMMMSANPEIWLKALERAGAPGVPKNLSQMATPEMLADWFYSSIDPQFQQAIVTRMLDPKKPQRWMQAMSNPRFYMHALAIMNPATPMQWMKVTADGRMIQPMQAWFDPKTYLNWMRLPMPS

BS_KBA_SWE07_21mDRAFT_c1008481

BS_KBA_SWE07_21mDRAFT_10084812

F060457

MPKDNADPRTSSSDIGIFLSTIFHIASIACVPFLVNGTVNGNIYTCGLLFVWIIYYSFRLAKSRKLLGLAFFGMTLSAMVLGIYNFGLMSQYKNAKLYLGEEKEFCRETTYETLLLKYETEKSMISASFRICLDKQHVQPETCIKEVNQRTSLNEVMFGNRLLRLSNCANSLTTKEKSLDRLKNKPWVKFWLSLL*

BS_KBA_SWE07_21mDRAFT_c1009474

BS_KBA_SWE07_21mDRAFT_10094741

F029478

IRVAAALLLSQVLSGCVSLRIEKMQEGVDVAPPPVEFIQKKTLLEEVLAGYGAPTDLVDMNGDFALHYRRALYRGLRVSMGIPLKSVLLPNPSMEAKGNLLRYDTAVFIFTADGVLKDMKYEKGTSRSLWEDYWR*

BS_KBA_SWE07_21mDRAFT_c1015327

BS_KBA_SWE07_21mDRAFT_10153271

F104469

KSLGNHDQALPDADDNASFVFDKDDQSISSHGSVVVNSCCDTSFDGTTKIPTDENDYACFTTSQKCVTSLMYLLDDMECPDYAFQSIMEWARNCFEAGFDFNPRSRTRLANLKWMYNSLHNSEQLLPSVVTIQLPDPLPTVKSMDVICYDFVPQLLSILQNKEMMSVNNLVLDPMNPLSMYKPSDNRLGESLSGSVYQSMYQRLVTNPSKQFLCPLICYTDGTQVDALSRFSVEPFLFTPAVLSHAARCKAEAWRPFGYVQHLRCHETKLDGGAKARNYHAQLQAMLQGL

BS_KBA_SWE07_21mDRAFT_c1019963

BS_KBA_SWE07_21mDRAFT_10199632

F040160

KVKSLCAAISSHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIEAIGTEEQGAFKKTKAVGKYKEPTDSTIDPDLDEI*

BS_KBA_SWE07_21mDRAFT_c1021914

BS_KBA_SWE07_21mDRAFT_10219142

F105200

VPDTFDRELEQLLQYSETPQPEAFVMDVMRGVRREQRTRKIILWAFGLIGALFGLSGAXMLXGPVSGLFTFSLALPAMETMQVTLFIVGAAAFYLWFMNDDFSLGN*

BS_KBA_SWE07_21mDRAFT_c1024494

BS_KBA_SWE07_21mDRAFT_10244941

F041807

MARLELTLNFPKSFHIKTFNVKSEKKLSPLAKLILQNVQFKHFYYVRDD

BS_KBA_SWE07_21mDRAFT_c1027979

BS_KBA_SWE07_21mDRAFT_10279792

F013428

VSGNDVANGPTDQQRRGIRRTTILLVLVALAIYVAFIASGVMKAQH*

BS_KBA_SWE07_21mDRAFT_c1030452

BS_KBA_SWE07_21mDRAFT_10304522

F015324

MALVNQVQKRVKMPKWDIVKFQILTHCYVNHITMSDSDLNCLTLLSFNQPIELTHFCYDASAED

BS_KBA_SWE07_21mDRAFT_c1032998

BS_KBA_SWE07_21mDRAFT_10329981

F082378

LKEQERKRFTDVQIQMQNLAGETGEYLIEFSSEDPDNAQTIGTTTTFLGGEMLAPSTVGEAETANIRARLGGIRGYTGTVILTRTEGSPKIHSTRISASITNRQIISQK*

BS_KBA_SWE07_21mDRAFT_c1037135

BS_KBA_SWE07_21mDRAFT_10371352

F098776

MSATHFDFTTLKFFLFRNQSNRLSIPPCHILILFWCALVILYDVTGLS

BS_KBA_SWE07_21mDRAFT_c1039713

BS_KBA_SWE07_21mDRAFT_10397131

F100438

QAKSLKLEKIMNEKMSKRRIQITDLQKQEIEEKQERRLLIRLHIFYLILLINL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000134: Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 07_21m

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences