Sample 3300000132

Overview

Basic Information
IMG/M Taxon OID	3300000132 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063447 \| Gp0053476 \| Ga0026114
Sample Name	Marine microbial communities from chronically polluted sediments in Antarctica - King George Island site S2 sample ANT 05_23.45m
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	194499958
Sequencing Scaffolds	14
Novel Protein Genes	15
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus kandeliae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Anderseniella → unclassified Anderseniella → Anderseniella sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	7
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → intertidal zone → marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	S2 site, Potter Cove, King George Island, Antarctic Peninsula
Coordinates	Lat. (^o)	-62.231932	Long. (^o)	-58.655087	Alt. (m)	N/A	Depth (m)	23.45
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F008782	Metagenome / Metatranscriptome	328	Y
F012678	Metagenome / Metatranscriptome	278	Y
F018541	Metagenome / Metatranscriptome	234	Y
F034189	Metagenome / Metatranscriptome	175	Y
F048318	Metagenome / Metatranscriptome	148	Y
F057384	Metagenome / Metatranscriptome	136	Y
F073087	Metagenome	120	Y
F073960	Metagenome	120	Y
F084255	Metagenome / Metatranscriptome	112	Y

Scaffold	Taxonomy	Length	IMG/M Link
KGI_S2_ANT05_2345mDRAFT_c1003931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus kandeliae	4258	Open in IMG/M
KGI_S2_ANT05_2345mDRAFT_c1010893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Anderseniella → unclassified Anderseniella → Anderseniella sp.	2127	Open in IMG/M
KGI_S2_ANT05_2345mDRAFT_c1025501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1109	Open in IMG/M
KGI_S2_ANT05_2345mDRAFT_c1031338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	951	Open in IMG/M
KGI_S2_ANT05_2345mDRAFT_c1041583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	778	Open in IMG/M
KGI_S2_ANT05_2345mDRAFT_c1048997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	697	Open in IMG/M
KGI_S2_ANT05_2345mDRAFT_c1057799	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	626	Open in IMG/M
KGI_S2_ANT05_2345mDRAFT_c1058981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	619	Open in IMG/M
KGI_S2_ANT05_2345mDRAFT_c1064284	Not Available	586	Open in IMG/M
KGI_S2_ANT05_2345mDRAFT_c1066269	Not Available	575	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

KGI_S2_ANT05_2345mDRAFT_c1003931

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus kandeliae

4258

Open in IMG/M

KGI_S2_ANT05_2345mDRAFT_c1010893

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Anderseniella → unclassified Anderseniella → Anderseniella sp.

2127

Open in IMG/M

KGI_S2_ANT05_2345mDRAFT_c1025501

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

1109

Open in IMG/M

KGI_S2_ANT05_2345mDRAFT_c1031338

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

951

Open in IMG/M

KGI_S2_ANT05_2345mDRAFT_c1041583

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

778

Open in IMG/M

KGI_S2_ANT05_2345mDRAFT_c1048997

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

697

Open in IMG/M

KGI_S2_ANT05_2345mDRAFT_c1057799

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta

626

Open in IMG/M

KGI_S2_ANT05_2345mDRAFT_c1058981

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

619

Open in IMG/M

KGI_S2_ANT05_2345mDRAFT_c1064284

Not Available

586

Open in IMG/M

KGI_S2_ANT05_2345mDRAFT_c1066269

Not Available

575

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
KGI_S2_ANT05_2345mDRAFT_c1003931	KGI_S2_ANT05_2345mDRAFT_10039315	F073087	MNTQHQTSFTKAIIGSTQRLFRSNKNHSLLANNHINARTMRDIGIDQFGWN*
KGI_S2_ANT05_2345mDRAFT_c1010893	KGI_S2_ANT05_2345mDRAFT_10108934	F073087	TSFTKAIIVSTQRLFRSNKNHSLLATNCIDACTARDIGFNPVGQF*
KGI_S2_ANT05_2345mDRAFT_c1025501	KGI_S2_ANT05_2345mDRAFT_10255011	F018541	MYSPTMRSFWVDFPLNAEQYSKLKLKWRRRQNNYEIQNPLPELRIRSFCTFGGDDYQIISLEVRGGVDDYHAALNVMDKWIVETLGEY*
KGI_S2_ANT05_2345mDRAFT_c1031338	KGI_S2_ANT05_2345mDRAFT_10313381	F048318	PGYSDIAYSYELHPSELDCAWKREYTMSTDLWGEDMIDDDVLAWEKDEHKVKFDDSGPCEPIKVGRVFEVETKVLDEDLFGDDEVYLMVEASSGLGSDAAGEDPVMGRSNTVIGDF*
KGI_S2_ANT05_2345mDRAFT_c1041583	KGI_S2_ANT05_2345mDRAFT_10415831	F084255	MESSKRYLLQAEIEYWHEMLYLNKSRMSKNREEETRACLKKAVRSMNTNSIRDFRVAA*
KGI_S2_ANT05_2345mDRAFT_c1048997	KGI_S2_ANT05_2345mDRAFT_10489972	F057384	MIHKRMDEASIDTALDAYLHGAKEGDFKQAQQLHEMLDFMLTEREIPDGQLWLTEHGKLLLADMHRQLSHCEGDTDQLRDTVLEAVQLKPNQGKWKDTCSYVRDLKIAITVANELCEQRGAGRNPDITEAAKAVADSGEFGLDTSRICEVYDEIASTVGGFREFS
KGI_S2_ANT05_2345mDRAFT_c1057799	KGI_S2_ANT05_2345mDRAFT_10577991	F001506	EELSINKKRSSSNRSEGKPLQYPKPNEITSKTFQIKYEKELSSIAKFILNSFQNKYIYYAIDDILYLLKSNPIERENLLAIIYSPVLSLQNNFSINFFDIWIHEIYINEVSKINKFITNDSQNLEQFSYITIKLLYKTRVPIKKQDSLW*
KGI_S2_ANT05_2345mDRAFT_c1058981	KGI_S2_ANT05_2345mDRAFT_10589811	F048318	ENVHLAITASTTKPGYSDIAYSYELHPSELDCTWKREYTMSTDLWGEDVIDDDILACDKDEHKVKFDDSGPCEPIKVGRVFEVXTKVLDEDLFGDDEVYLMVEARSGLGSDAAGEDPVMGRSNTVIGDF*
KGI_S2_ANT05_2345mDRAFT_c1064284	KGI_S2_ANT05_2345mDRAFT_10642842	F034189	MTTNLAKWASNNGQIIKSGLSDGRRVYFLPSVVGVVYDWLRIGGHLGNV
KGI_S2_ANT05_2345mDRAFT_c1065854	KGI_S2_ANT05_2345mDRAFT_10658542	F073960	MDDAQQLPNDLVECQQLLLAAFKQASELERVLDETAASHEELIEKHEATVDELNALKRWI
KGI_S2_ANT05_2345mDRAFT_c1066269	KGI_S2_ANT05_2345mDRAFT_10662692	F008782	MKKPIFRVFVSYEIKNKGAVTRKVTTGILDTFALTSNIQEIKNDQELIDRICYLNKKKLNKVDITITSVDVENQYGETVD
KGI_S2_ANT05_2345mDRAFT_c1067760	KGI_S2_ANT05_2345mDRAFT_10677601	F048318	MATVENVRLAITASTTKPGYSDIAYSYELHPSELDCAWKREYTMSTVLCGEDVIEDDVLAWGKDEHKVKFDDSGPCESIKVGRVFEVETKVLDEDVFGDDEVYLIVEARSGLRPD
KGI_S2_ANT05_2345mDRAFT_c1072210	KGI_S2_ANT05_2345mDRAFT_10722101	F012678	MLNQHSLEEIADIHNLLVDIKKEYEKGIKPILIKNNPKFFRNPHTVPKLKKIQINR
KGI_S2_ANT05_2345mDRAFT_c1078353	KGI_S2_ANT05_2345mDRAFT_10783533	F096047	KLKRLSSPIYRVIIEYGYRKKGSVRHYKYKIIDTFALTSDVDMIRKDKEVNAKILRQLKSGNKEMDIMFKSIYVEGQYGNTNY*
KGI_S2_ANT05_2345mDRAFT_c1082769	KGI_S2_ANT05_2345mDRAFT_10827692	F097365	MVNKSDWQEMKRHAFDAFARDGRMSVSELENIVNIGVADGEFDEQEKAVLINIISNLTRADMNDAMWLKVDELIHKFDLHDDSEAFIEHLDDDNEY*

Scaffold ID

Protein ID

Family

Sequence

KGI_S2_ANT05_2345mDRAFT_c1003931

KGI_S2_ANT05_2345mDRAFT_10039315

F073087

MNTQHQTSFTKAIIGSTQRLFRSNKNHSLLANNHINARTMRDIGIDQFGWN*

KGI_S2_ANT05_2345mDRAFT_c1010893

KGI_S2_ANT05_2345mDRAFT_10108934

F073087

TSFTKAIIVSTQRLFRSNKNHSLLATNCIDACTARDIGFNPVGQF*

KGI_S2_ANT05_2345mDRAFT_c1025501

KGI_S2_ANT05_2345mDRAFT_10255011

F018541

MYSPTMRSFWVDFPLNAEQYSKLKLKWRRRQNNYEIQNPLPELRIRSFCTFGGDDYQIISLEVRGGVDDYHAALNVMDKWIVETLGEY*

KGI_S2_ANT05_2345mDRAFT_c1031338

KGI_S2_ANT05_2345mDRAFT_10313381

F048318

PGYSDIAYSYELHPSELDCAWKREYTMSTDLWGEDMIDDDVLAWEKDEHKVKFDDSGPCEPIKVGRVFEVETKVLDEDLFGDDEVYLMVEASSGLGSDAAGEDPVMGRSNTVIGDF*

KGI_S2_ANT05_2345mDRAFT_c1041583

KGI_S2_ANT05_2345mDRAFT_10415831

F084255

MESSKRYLLQAEIEYWHEMLYLNKSRMSKNREEETRACLKKAVRSMNTNSIRDFRVAA*

KGI_S2_ANT05_2345mDRAFT_c1048997

KGI_S2_ANT05_2345mDRAFT_10489972

F057384

MIHKRMDEASIDTALDAYLHGAKEGDFKQAQQLHEMLDFMLTEREIPDGQLWLTEHGKLLLADMHRQLSHCEGDTDQLRDTVLEAVQLKPNQGKWKDTCSYVRDLKIAITVANELCEQRGAGRNPDITEAAKAVADSGEFGLDTSRICEVYDEIASTVGGFREFS

KGI_S2_ANT05_2345mDRAFT_c1057799

KGI_S2_ANT05_2345mDRAFT_10577991

F001506

EELSINKKRSSSNRSEGKPLQYPKPNEITSKTFQIKYEKELSSIAKFILNSFQNKYIYYAIDDILYLLKSNPIERENLLAIIYSPVLSLQNNFSINFFDIWIHEIYINEVSKINKFITNDSQNLEQFSYITIKLLYKTRVPIKKQDSLW*

KGI_S2_ANT05_2345mDRAFT_c1058981

KGI_S2_ANT05_2345mDRAFT_10589811

F048318

ENVHLAITASTTKPGYSDIAYSYELHPSELDCTWKREYTMSTDLWGEDVIDDDILACDKDEHKVKFDDSGPCEPIKVGRVFEVXTKVLDEDLFGDDEVYLMVEARSGLGSDAAGEDPVMGRSNTVIGDF*

KGI_S2_ANT05_2345mDRAFT_c1064284

KGI_S2_ANT05_2345mDRAFT_10642842

F034189

MTTNLAKWASNNGQIIKSGLSDGRRVYFLPSVVGVVYDWLRIGGHLGNV

KGI_S2_ANT05_2345mDRAFT_c1065854

KGI_S2_ANT05_2345mDRAFT_10658542

F073960

MDDAQQLPNDLVECQQLLLAAFKQASELERVLDETAASHEELIEKHEATVDELNALKRWI

KGI_S2_ANT05_2345mDRAFT_c1066269

KGI_S2_ANT05_2345mDRAFT_10662692

F008782

MKKPIFRVFVSYEIKNKGAVTRKVTTGILDTFALTSNIQEIKNDQELIDRICYLNKKKLNKVDITITSVDVENQYGETVD

KGI_S2_ANT05_2345mDRAFT_c1067760

KGI_S2_ANT05_2345mDRAFT_10677601

F048318

MATVENVRLAITASTTKPGYSDIAYSYELHPSELDCAWKREYTMSTVLCGEDVIEDDVLAWGKDEHKVKFDDSGPCESIKVGRVFEVETKVLDEDVFGDDEVYLIVEARSGLRPD

KGI_S2_ANT05_2345mDRAFT_c1072210

KGI_S2_ANT05_2345mDRAFT_10722101

F012678

MLNQHSLEEIADIHNLLVDIKKEYEKGIKPILIKNNPKFFRNPHTVPKLKKIQINR

KGI_S2_ANT05_2345mDRAFT_c1078353

KGI_S2_ANT05_2345mDRAFT_10783533

F096047

KLKRLSSPIYRVIIEYGYRKKGSVRHYKYKIIDTFALTSDVDMIRKDKEVNAKILRQLKSGNKEMDIMFKSIYVEGQYGNTNY*

KGI_S2_ANT05_2345mDRAFT_c1082769

KGI_S2_ANT05_2345mDRAFT_10827692

F097365

MVNKSDWQEMKRHAFDAFARDGRMSVSELENIVNIGVADGEFDEQEKAVLINIISNLTRADMNDAMWLKVDELIHKFDLHDDSEAFIEHLDDDNEY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000132: Marine microbial communities from chronically polluted sediments in Antarctica - King George Island site S2 sample ANT 05_23.45m

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences