NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000118

3300000118: Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 06_12.3m



Overview

Basic Information
IMG/M Taxon OID3300000118 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063447 | Gp0053466 | Ga0026084
Sample NameMarine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 06_12.3m
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size65605680
Sequencing Scaffolds73
Novel Protein Genes92
Associated Families75

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2
All Organisms → Viruses → Predicted Viral6
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata1
All Organisms → cellular organisms → Bacteria9
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria6
Not Available30
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont1
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Desulfobia → Candidatus Desulfobia pelagia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomeintertidal zonemarine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationOR site, Ushuaia Bay, Tierra del Fuego, Argentina
CoordinatesLat. (o)-54.80407Long. (o)-68.288208Alt. (m)N/ADepth (m)12.3
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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