Sample 3300000045

Basic Information
IMG/M Taxon OID	3300000045 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046726 \| Gp0054248 \| Ga0026160
Sample Name	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis Col-0 old rhizosphere
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	13358733
Sequencing Scaffolds	34
Novel Protein Genes	36
Associated Families	34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	16
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. GJ21	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
Not Available	4
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	4
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	1

Ecosystem Assignment (GOLD)
Name	Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9	Long. (^o)	-79.05	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002896	Metagenome / Metatranscriptome	522	N
F004391	Metagenome / Metatranscriptome	440	Y
F005305	Metagenome / Metatranscriptome	405	N
F006898	Metagenome / Metatranscriptome	362	Y
F010126	Metagenome / Metatranscriptome	308	Y
F013520	Metagenome / Metatranscriptome	270	Y
F013894	Metagenome	267	N
F015418	Metagenome / Metatranscriptome	255	Y
F020078	Metagenome / Metatranscriptome	226	Y
F020599	Metagenome / Metatranscriptome	223	N

Scaffold	Taxonomy	Length	IMG/M Link
ARCol0oldRDRAFT_c00016	All Organisms → cellular organisms → Archaea	12937	Open in IMG/M
ARCol0oldRDRAFT_c00097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7456	Open in IMG/M
ARCol0oldRDRAFT_c00124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6862	Open in IMG/M
ARCol0oldRDRAFT_c00165	All Organisms → cellular organisms → Archaea	6010	Open in IMG/M
ARCol0oldRDRAFT_c00447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3919	Open in IMG/M
ARCol0oldRDRAFT_c00642	All Organisms → cellular organisms → Bacteria → Proteobacteria	3067	Open in IMG/M
ARCol0oldRDRAFT_c00942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. GJ21	2249	Open in IMG/M
ARCol0oldRDRAFT_c01288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1754	Open in IMG/M
ARCol0oldRDRAFT_c01335	Not Available	1681	Open in IMG/M
ARCol0oldRDRAFT_c01431	All Organisms → cellular organisms → Archaea	1553	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
ARCol0oldRDRAFT_c00016	ARCol0oldRDRAFT_0001617	F068970	MIINLNIPAFGKYFEDIKVYSDVYTGGGNSSKPINQFDPVNKEIYVGQTIKWSNPTAGAPYPHIVVFVSNQSAELESKISNITKPLHSSNGQSVVGNLNKLLIEDNNQNNKSNQTFSARSIVLPSVINTSSLAVKYLNANGSGIYSGAGYNFTGNERYVSSGLIWAGGVIPGNFAKINSFIVTFTKPGTYHYQCLIYPEMKGTIIVKPNLGLFEIFGNQVK*
ARCol0oldRDRAFT_c00016	ARCol0oldRDRAFT_000162	F010126	MKSRNKSLIICTSVCMAALLQIITASQTVTAIDVPASSTNYNNYGFQLESNVTNSSSSEIVYKNPQHGISMLFPSNWTFSTSGLPQYTQVAAFYAPLQNLSDLIPARFTITVMSYQQNVSLKEFTXMTLSSLNETNQVKILSSNPTTLAGQXGYQVVFSTLPNMGSPVSFKIMHSWTAINNKIYVFEYGVESSKFNTYLPTVKQILDSLKIQAP*
ARCol0oldRDRAFT_c00097	ARCol0oldRDRAFT_000979	F031088	FSANAQVVIEERRDPAVVIEHDRPNTSVTVEKRDGFLGTEKKTITKETTGSGDCSSKTVHKEDITGSKTVQKTNCD*
ARCol0oldRDRAFT_c00124	ARCol0oldRDRAFT_001241	F015418	MSLVSRRTFTKGLLASTLVPGHSAIGQPNDLASIAIIDTPNNAAKVASKLAAQNVKVVVRFFARKPQPGLREKVMASDSNMIDGVREPTILIRN
ARCol0oldRDRAFT_c00165	ARCol0oldRDRAFT_0016510	F068943	VTIPLLLFITSITFSLLWIQDFATAEITVTPPSNWQGNPTNNSTAMAWLENSTKSVLVIYKVPDSLSFPLIFVGPFMSQFLANQGVLESAAQASFGHGNHGYRYLLNLSSPSKLLNSSSGLLPEGGVFGKIPKETDVPYKGMLFITEKHGNLYAILFGSPKGSFDYVLNAIKPTIDSIQFANSTNP*
ARCol0oldRDRAFT_c00447	ARCol0oldRDRAFT_004476	F052029	LALNFRSLLPANPVAQQEINNTGALSEQLVMIGAASLALLVVAAIAVLMGMA*
ARCol0oldRDRAFT_c00642	ARCol0oldRDRAFT_006424	F068796	VRKTKLLSTVAMALLLGGVAASAQGMGKEPPERAPAAQQSAPAEKVAPSIKAGEQK
ARCol0oldRDRAFT_c00942	ARCol0oldRDRAFT_009421	F020078	SATRFCWQSGVIALAAIIFAFLVPGVALCKVVSLTSIASAIAITTLVAGFGLYLAGQLIEKRTPQSERVDHCLQASILVTAAGLLWGHVVLQTGPWRDRSIEPGVAFAIVAGCGVAGALLLIRRARRLAANGSNLAKSTN*
ARCol0oldRDRAFT_c01288	ARCol0oldRDRAFT_012884	F040709	MIASIAWVLWTERKSKQALDKDALDQAWREVPDDPHYIERRHYEERMRIQDEARAAAAKRASVGSSGIGG
ARCol0oldRDRAFT_c01335	ARCol0oldRDRAFT_013352	F099702	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADXAAHKLSARN
ARCol0oldRDRAFT_c01431	ARCol0oldRDRAFT_014311	F028663	MNKQPTTHHSIIFPIVISIAFFIAIQVVYGQGQVNNLTVGKPYSFRNELINRIMNSTCTEKXLVIGAEKPTSVLYLSTIEEIFKMCVAQGSIK*
ARCol0oldRDRAFT_c01453	ARCol0oldRDRAFT_014532	F005305	VKDLENELGPLIENFQNLLKDAKAKKIDSLREDEDLKKEFNKLSKDVIEPVMRKFESYLKSKDVSSSVNVRSEIVPGKNPSIQFSLHFKLTHESRYPNIKFSSSGEKISIQVDRLVTTGEVSQAMMQEYYDKEQITEEFINERLVSLIKSCFDKNWE*
ARCol0oldRDRAFT_c01456	ARCol0oldRDRAFT_014563	F098876	NKLSKDVIEPVMRKFESYLKSKDVSSSVNVRSEIVSGKNPSIQFSLHFKLTHESRYPNIKFSSSGEKISIQVDRLVTTGEVSQAMMQEYYDKEQITEEFINERLIRLIKSCFDKNWE*
ARCol0oldRDRAFT_c01514	ARCol0oldRDRAFT_015142	F020931	LSPGFGFLKKKTSDFFLDKKSNSDFYQSVTDSELLHIIENEKKILEKDLINDLEPIRTSVLDCLNRLRDSAKELEDQEIKVENPQFEPLINTSKNILISSIKKESFIESSEIKNYEDAVKFKNNLELLVNRFGQVGDSHNRILNEFMRKQINKFKSEFDKISSLLKEVTKVLSVKESQINICITCREDLILLNEKLKEKKDKR
ARCol0oldRDRAFT_c01600	ARCol0oldRDRAFT_016001	F013520	LITLKVPYQPQASASVFLTRAAALYSTSERFDRMLARIMHPAETYRRRAERAERDFENARDPKAKRFAQVAAQRWRELAELAQRQETKGAPIPPHFRDASEAVHYAQAQGYLLYWKGTPAFTKRQRELGDRFAALPVFTRKGMTHVSLVPLDEQEKTSEKEPP*
ARCol0oldRDRAFT_c01620	ARCol0oldRDRAFT_016201	F002896	YIMSRFLKLFKVTLIQRHRLYIIKTTYDMEKINQDTISHFYRILENSLLESDISKMNEGDIDAWSQSFKKVVAESKEKSGKGVFVPFLMWKLGEISPVEASKYLDKRKDDECRVSYDHNNVEYVIWVMTLMFMSWSITNLKRKRQNGHCQNINHPHGNTNPRYCQEGTKFHQELYNECVKTFEDLLTRSNSLKEEKL*
ARCol0oldRDRAFT_c01838	ARCol0oldRDRAFT_018382	F010126	MAALLQIVIESQTVTAIDVPASSTNNNNYGFQLESNVTNSSSNEVVYRNPQHGIFMLFPSNWTFSTSGLPQYTQVAAFYAPLQNLSDLIPARFTITVMSYQQNVSLKEFTNMTLSSLNETNQVKILSSNPTTLAGQPGYQVVFSTLPNMGSPVSFKIMHSWTAINNKIYVFEYGVESSKFNTYLPTVKQILDSLKIQAP*
ARCol0oldRDRAFT_c01849	ARCol0oldRDRAFT_018491	F013894	DNKTQMTFSSNGTFKGNIEVTNSGDLVSMSKGNKGTSAQGQGVVTTKDGSEKANYTFLQVGKTTTKNGKPVLRGVGSAVWSTDSTGKLAFLDNMLSFFILEVDEMGNFSSKDRELK*
ARCol0oldRDRAFT_c01945	ARCol0oldRDRAFT_019451	F006898	MYLLHITTTTILLLFLIQSAYSLEEKFRGLPFSIEVPNTWSYTESPETPLEHALGLSSYSSVVLVPAKFADLLIQDKGNIEMGNGTAAILFAEDSDYTVKNAPPELYVKFXMNKDDSLNVTSQQDTXVGKEKAVRIDGTKNDTAGPLKVSEYLLTHNNEPYIIRYIASTNDFKKYLPDFELMVRSFMFGTNSTRS*
ARCol0oldRDRAFT_c02085	ARCol0oldRDRAFT_020851	F024262	YLLANLIFSYFLISCVFSLLNRKSLNPLPIILVSPVAIFPIYLILSSAYDLAINESTELEFIVNALYYIFDGLMLITALIIILNLKKYDPFIFHWIFITLGLILLVIGDVGYTYFSIISESLIEEYEWLWSIIYAIGYLFLGIGIYWFDRIKNTLEVKKINVFLEKDEMDRLKNSSKNELIADSGTEFSDHIIGYENFVDKLEDYLEWSKEIKILFYDKYWLGNEEVILILEKIQQRAVVTEIQVNILLPSSEIIFKSLVSYNENRNILVSFFDRAFSSNSLVFIFEEKYVAIMDRKPASEFVNNDAAVYALITNKDTTVWSHIDTFEKI
ARCol0oldRDRAFT_c02133	ARCol0oldRDRAFT_021331	F024262	ILVSPVAILPIYLLFSSAYDLAINESTALEFIVNALYYIFDALMLVTALIIILNLKKYDPFIFHWIFITAGLVLLVIGDVGYTYFSIISESLIEDYEWLWSIVYAIGYLFLGIGIYWFDRIKNTLEDKKINVFLEKDEMDRLKNSSKNELIAGNGTEFTEHIIGYENFVDKLEDYLERSKQIKILFYDRYWLNDEQVSLILEKIQQRSFVTQIQVNILLPSSEIIFENLVSCNDNKSILVCFFDRTFSSDSLVFIFEEKYVAIIDRKPTSETVDNDTVFYGLITNKDAIVWSHITTFEKIWVLEKAVNM*
ARCol0oldRDRAFT_c02157	ARCol0oldRDRAFT_021573	F087254	MHSVSGFFLIVTFVIIGLSILAVYTTILATELGLEKDDMQITSLTHLIKSMDWENDYNEEKIGERILKAQLDDLNIRLQSNNTQKNVTDLENNLAMYKSHLEHLKEGVTANGSFLNLKYESESEYESFLQSADHISDISKKIGIYELITVLLII
ARCol0oldRDRAFT_c02235	ARCol0oldRDRAFT_022352	F053116	MNILKRNRFDRRSDSTLIVLIAISLLYIMVTITALYPFDRLQIVAAATLQENNNNTKPVFLSTISTAIATGVGATGAILTVPGYLRARKQPKFLASYLLKIHNKHDELWRYPKLSDKSKNEYRNFLDSLRCDIIYSLKNGDINENQYRLIEERIAEYLSRLNYPK*
ARCol0oldRDRAFT_c02417	ARCol0oldRDRAFT_024171	F023635	MLMTNSGQVTILGLLILITFVNVGLIAYPFAWQGEATTALNNSKASSIDGNRTVTPHGANISATLPLLVLFPEASQISPTGFSTKADGRLQIEVLFSKPVDTSTFIPGTSLILAMETNANATVTVKWDLNNRFLTIVTNDLLSSLCHFDPDCNFALRLDGTAPNSIKATDGSLLNGGFDNYWRGFVIIG*
ARCol0oldRDRAFT_c02440	ARCol0oldRDRAFT_024401	F031906	MRLSLILISILTVVMTISLSISNVNALSKVNNRYFSMDIPDNWAFEQDTLSQPALTPTEFAAFLVNHSEPLNEKMKVGGAFASFKQDSSYGIKNAPFDVYVRDKIDQQDGMKVTSKENGTIDNEAAVRILGDGINSFSGIKFVQYLVWHDKK
ARCol0oldRDRAFT_c02537	ARCol0oldRDRAFT_025371	F106125	MCADVKGFDDIQKHLRDLASSADPNTFNEWANRIGRTAKEICNDPDCKRIKLIKDEYGKIKFQFADKEAVDCVIQAIKTHLDSMPKTQQVIFKGFTTELEKIKIHF*
ARCol0oldRDRAFT_c02589	ARCol0oldRDRAFT_025891	F090007	MDESMLPTKIRQEEDRREVEIIKFIKQNPGSITNQVIKYMDKKGSSKITTLKIINELIEGKRIRDEHVKLNRFHKLFYDDNNDFDLINNQLTKIEKIIDVMNKPLRKIQRLIEDQQSELLRLTNEKVPLKQRRKFVSEELYGLQIDYQFTYLHMMDIMFHVLSLHIDERIHSDKDLQKLYTKIIRLMRKVSRQFPRNAKVTLDGIISY
ARCol0oldRDRAFT_c02597	ARCol0oldRDRAFT_025971	F066928	MSPADRYRALAAHLRTRAAREQSPVLRTQWAKLAQCYVRLAGQADQNSRADIVYEFDRSVRRGDV
ARCol0oldRDRAFT_c02725	ARCol0oldRDRAFT_027251	F020599	DNIPTPTGIGYENGLSHYFIASAGPAANQLYPTSDLVNSRAWYQVIFTTGTTAAIKEVEVDFPPGTNIADAKLVDASGLGPGTYKISGQTITYTLAPEVLVPANTELRLLYDNLLNPSIPDANLTVRIITKDSTGSTIDSGTSLAYKIRQIGTDDISNKSITREKIEPGAVIPVVNLRSSEVVSIPPQRDQSAIAVCSTGEVATGGGYISNSPNVTVTFSSLGDQPRPSWVIHAVNNDTVAHNITAT
ARCol0oldRDRAFT_c02779	ARCol0oldRDRAFT_027791	F101456	IPIAYAKLELDPDTPHWMIPIFQRCTLAYSDTDHRHKERLVLFSEDCLLPLKYFESHGWKFLTNESEFITLEKDKD*
ARCol0oldRDRAFT_c03061	ARCol0oldRDRAFT_030611	F080466	QTYKNRRSITTVNKHLPFVWRVNYLHEASTPEIMPEIAHEKARQILQKNLSRMGRR*
ARCol0oldRDRAFT_c03123	ARCol0oldRDRAFT_031232	F042938	VKDLEKELGPLIENFQNLLKDAKTKKIDSLREDEDLKKEFNQLSKDVIEPVMRKFESYLKSKEVISSVNV
ARCol0oldRDRAFT_c03588	ARCol0oldRDRAFT_035882	F004391	LEYRARRGEIILLYEDETILWRFALPRAGWWRKAQRARLPTRPLSQSQIKRDESLKRQAWVRYRSWSRVTSGVLLSVIGAVQYGTSKVFYKIVPQFDTEGFRQYIHQLMALFGRTGKEVVMVVDRSGI
ARCol0oldRDRAFT_c03711	ARCol0oldRDRAFT_037111	F032715	KAAIIFLPDEAHHPPADDKTISPKNPNYLPGTLVVPEGTEVAFAHDDPNHIHVGIVKDKSGNVAWTTIPAKFPGSSDSKVLDMSGSPYTVSDKQFSPPMEGKIVVKPQKSTGDLTVGGFFCPTKQLSNCKSQFSKAGFQILSEYDFVTKSVQQDITGPNTLLIYSTPLALKDAISSLTPIIKSLPYK
ARCol0oldRDRAFT_c03930	ARCol0oldRDRAFT_039302	F103926	VDAHSISWFVDNAQNQTIAYVNTTDTANHVDMEIHLTGTNINLSGSDILHHT*
ARCol0oldRDRAFT_c03959	ARCol0oldRDRAFT_039591	F095243	VVPGISGAPGFKTGYWTWSSGGELNGLSMIIFDSEENARAAGDRISAIAANAPDDVTLDGVEVREVVASA*

Showing 1 to 36 of 36 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000045: Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis Col-0 old rhizosphere

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences