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Sample 2199352008
2199352008: Thermophilic microbial communities from the Joint Bioenergy Institute, California, USA of rice/straw/compost enrichment - eDNA_2
Overview
| Basic Information |
|---|
| IMG/M Taxon OID | 2199352008 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0063773 | Gp0052187 | Ga0026265 |
| Sample Name | Thermophilic microbial communities from the Joint Bioenergy Institute, California, USA of rice/straw/compost enrichment - eDNA_2 |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents |
|---|
| Total Genome Size | 256665756 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 7 |
| Dataset Phylogeny |
|---|
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
|---|
| Name | Rice-Straw Enriched Compost Microbial Community From Berkeley |
| Type | Engineered |
| Taxonomy | Engineered → Solid Waste → Grass → Composting → Bioreactor → Rice-Straw Enriched Compost → Rice-Straw Enriched Compost Microbial Community From Berkeley |
| Alternative Ecosystem Assignments |
|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information |
|---|
| Location | Davis, California, USA |
| Coordinates | Lat. (o) | 38.5402727 | Long. (o) | -121.7500776 | Alt. (m) | N/A | Depth (m) | N/A |
| Location on Map |
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Associated Families
Associated Scaffolds
Sequences
