NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2170459001

2170459001: soil microbial communities from McMurdo Dry Valleys (Wright Valley), Antarctica



Overview

Basic Information
IMG/M Taxon OID2170459001 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0047452 | Gp0051901 | Ga0011276
Sample Namesoil microbial communities from McMurdo Dry Valleys (Wright Valley), Antarctica
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of New Mexico
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size6261012
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePolar Desert Microbial Communities From Mcmurdo Dry Valleys, Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Polar Desert → Polar Desert Microbial Communities From Mcmurdo Dry Valleys, Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)polar desert biomedesertpermafrost
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationMcMurdo Dry Valleys (Wright Valley), Antarctica
CoordinatesLat. (o)77.4475Long. (o)162.676389Alt. (m)N/ADepth (m).1
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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