2149837011: Fresh water microbial communities from LaBonte Lake, Laramie, Wyoming, sample from post-bloom

Overview

Basic Information

• IMG/M Taxon OID: 2149837011
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0060830 | Gp0051496 | Ga0026455
• Sample Name: Fresh water microbial communities from LaBonte Lake, Laramie, Wyoming, sample from post-bloom
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 57916305
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Labonte Lake, Laramie, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Labonte Lake, Laramie, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater algal bloom → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: LaBonte Lake, Laramie, Wyoming
• Coordinates
  • Lat. (^o): 41.321
  • Long. (^o): -105.586
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002434	Metagenome / Metatranscriptome	559	Y
F040943	Metagenome / Metatranscriptome	161	Y
F040944	Metagenome / Metatranscriptome	161	Y
F042654	Metagenome	158	Y
F069495	Metagenome / Metatranscriptome	124	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
_GVKGB5S02JMGQK	Not Available	528
_GVKGB5S02JWVY8	Not Available	524
LBLPo__contig00031	Not Available	787
LBLPo__contig00060	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	658
LBLPo__contig00086	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	606

Sequences

Scaffold ID	Protein ID	Family	Sequence
_GVKGB5S02JMGQK	LBLPo_00512020	F002434	RCGDCCLTTESHDKMIAAFQEYFKWQERFEYKGSDEAGIKARYWLSEIRNEASKRRVEIQEKREQRKTARKGMLGRPPKVIK
_GVKGB5S02JWVY8	LBLPo_00612070	F069495	RQQQEDRMAKITLEELCDIAFAVEEGDPFDWGVFKQGQEEAMKMIGASVLEMFDKDSYTSEQKLIMLATITKLTTENMILHSKLLTNSQKDV
LBLPo__contig00031	LBLPo_00324290	F040944	MESMVHTENEKLFPSGGLSIPYEVGHGITLASLIDSRDYLQSELDQWTDNPKDEMNPDGYWLHPEDVVNNMKLVRAMNLLIEYYGG
LBLPo__contig00060	LBLPo_00788600	F040943	KAEGGIQRKTCPMCGKKHNKRGEFCSRSCGNTRKHTESAKRKISKGKSAWLNSGSEEAEVAIHNFTSKGLHKTPDPVAPIVSRDLGYGRYVEDGDVWEEV
LBLPo__contig00086	LBLPo_01204220	F042654	MLNNHEFNNLERRLWREGNPLCDELVSTRDELIFLLSQAKKVMEKYSFDLSTLSDDDDLDYFREWDEFGDALDNLTYELGIKP