NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2140918002

2140918002: Rhizosphere and bulk soil microbial communities from the Great Lakes - Sample MSB1



Overview

Basic Information
IMG/M Taxon OID2140918002 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046933 | Gp0052277 | Ga0010919
Sample NameRhizosphere and bulk soil microbial communities from the Great Lakes - Sample MSB1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size9701071
Sequencing Scaffolds60
Novel Protein Genes63
Associated Families51

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea42
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium4
All Organisms → cellular organisms → Bacteria4
Not Available6
All Organisms → cellular organisms → Archaea → TACK group1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameRhizosphere And Bulk Soil Microbial Communities From The Great Lakes
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Unclassified → Rhizosphere And Bulk Soil → Rhizosphere And Bulk Soil Microbial Communities From The Great Lakes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomerhizospherebulk soil
Earth Microbiome Project Ontology (EMPO)Host-associated → Plant → Plant rhizosphere

Location Information
LocationRose Lake, Michigan, USA
CoordinatesLat. (o)44.0647Long. (o)-85.3817Alt. (m)N/ADepth (m)32
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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