Basic Information | |
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IMG/M Taxon OID | 2140918002 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046933 | Gp0052277 | Ga0010919 |
Sample Name | Rhizosphere and bulk soil microbial communities from the Great Lakes - Sample MSB1 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 9701071 |
Sequencing Scaffolds | 60 |
Novel Protein Genes | 63 |
Associated Families | 51 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Archaea | 42 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 4 |
All Organisms → cellular organisms → Bacteria | 4 |
Not Available | 6 |
All Organisms → cellular organisms → Archaea → TACK group | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Rhizosphere And Bulk Soil Microbial Communities From The Great Lakes |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Loam → Unclassified → Rhizosphere And Bulk Soil → Rhizosphere And Bulk Soil Microbial Communities From The Great Lakes |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → rhizosphere → bulk soil |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere |
Location Information | ||||||||
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Location | Rose Lake, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.0647 | Long. (o) | -85.3817 | Alt. (m) | N/A | Depth (m) | 32 |
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