2077657018: Marine sediment archaeal communities from Santa Barbara Basin, CA, that are methane-oxidizing, sample 0-3 cm

Overview

Basic Information

• IMG/M Taxon OID: 2077657018
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046212 | Gp0051826 | Ga0026315
• Sample Name: Marine sediment archaeal communities from Santa Barbara Basin, CA, that are methane-oxidizing, sample 0-3 cm
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 202177532
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis associated proteobacterium Delta 3	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Archaeal Communities From Santa Barbara Basin, Ca, That Are Anaerobic And Methane-Oxidizing
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Archaeal Communities From Santa Barbara Basin, Ca, That Are Anaerobic And Methane-Oxidizing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Santa Barbara Basin
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -119.5
  • Alt. (m): N/A
  • Depth (m): to .03

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012457	Metagenome	280	Y
F015930	Metagenome	251	Y
F035021	Metagenome / Metatranscriptome	173	Y
F039645	Metagenome	163	Y
F064729	Metagenome	128	Y
F085722	Metagenome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
ASA120_GJFD58A02F0Z6Z	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500
ASA120_GJFD58A02F5QAY	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis associated proteobacterium Delta 3	503
ASA120_GJFD58A02F8532	Not Available	521
ASA120_GJFD58A02GEM1U	Not Available	518
ASA120_GJFD58A02GNMH4	Not Available	507
ASA120_GJFD58A02IVN3Y	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
ASA120_GJFD58A02F0Z6Z	ASA120_02355310	F035021	MLAIRVAVDDATCVPGLMRRLARLFDRSSISFDRSRREVRVESEWGSRSVVSVIDAVAGWLAEDGGSSATLSIGDRSYTLAGPTPLVRP
ASA120_GJFD58A02F5QAY	ASA120_04820600	F039645	MPTPITAFADAAAKYGDIDPNDIEAVQKWFAGELPKLPVDTIEQVLHDLLERDGTTAEREIVPIYPKRVPLPSLGSSPPALPPLLAEQWRTL
ASA120_GJFD58A02F8532	ASA120_04831110	F085722	MKMIRNAMAGVCYALLVIGLNGCSNPHKEAARASTESSKAEASVHNEKAKILEDYRKCLNKNKSNEKACESYKRALDTM
ASA120_GJFD58A02GEM1U	ASA120_00223650	F064729	MGDLKEWLKYWRKVISKCSRIHKDSKAHKRAYSELSGYLNSVEESANDGELDATVLWAVRFMQRMHELEKEIGLHVLEKKVHSTHKEKEL
ASA120_GJFD58A02GNMH4	ASA120_03770030	F015930	MIKKEYSEKDYWEGKVPDEKFDEYLKKYGYEYTPTDYNKIPKRY
ASA120_GJFD58A02IVN3Y	ASA120_03314190	F012457	MMIKDLEMSKDLDRDALSAVRGGGNSISQGGVYAPVANVDAGFSFASPTTIVSTPINAPTAVLNDNDLDLDIATKTANVLGSLGTLVAQ