Sample 2077657009

Basic Information
IMG/M Taxon OID	2077657009 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046183 \| Gp0051757 \| Ga0026432
Sample Name	Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 6993
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

2077657009 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0046183 | Gp0051757 | Ga0026432

Sample Name

Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 6993

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	100678798
Sequencing Scaffolds	40
Novel Protein Genes	42
Associated Families	22

Dataset Contents

Total Genome Size

100678798

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	37
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → Viruses

All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.

Ecosystem Assignment (GOLD)
Name	Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il

Ecosystem Assignment (GOLD)

Name

Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il

Type

Host-Associated

Taxonomy

Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal proximal gut

Location Information
Location	University of Illinois Dairy Farm in Urbana, IL
Coordinates	Lat. (^o)	40.0886	Long. (^o)	-88.2202	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

University of Illinois Dairy Farm in Urbana, IL

Coordinates

Lat. (^o)

40.0886

Long. (^o)

-88.2202

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F023997	Metagenome / Metatranscriptome	208	Y
F039427	Metagenome / Metatranscriptome	163	Y
F042680	Metagenome / Metatranscriptome	157	Y
F046753	Metagenome	150	Y
F046769	Metagenome / Metatranscriptome	150	Y
F051619	Metagenome / Metatranscriptome	143	Y
F053097	Metagenome / Metatranscriptome	141	Y
F056169	Metagenome / Metatranscriptome	138	Y
F057037	Metagenome / Metatranscriptome	136	Y
F057815	Metagenome / Metatranscriptome	135	Y
F061341	Metagenome / Metatranscriptome	132	Y
F061418	Metagenome	131	Y
F062320	Metagenome / Metatranscriptome	130	Y
F071811	Metagenome / Metatranscriptome	121	Y
F079361	Metagenome / Metatranscriptome	116	Y
F082004	Metagenome / Metatranscriptome	113	Y
F082887	Metagenome / Metatranscriptome	113	Y
F089629	Metagenome / Metatranscriptome	108	Y
F093002	Metagenome	106	Y
F100165	Metagenome / Metatranscriptome	102	N
F102209	Metagenome	101	Y
F102225	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
BRPC3_contig01109	Not Available	957	Open in IMG/M
BRPC3_contig01113	All Organisms → Viruses → Predicted Viral	1742	Open in IMG/M
BRPC3_contig02008	Not Available	886	Open in IMG/M
BRPC3_contig02345	Not Available	572	Open in IMG/M
BRPC3_contig03583	Not Available	594	Open in IMG/M
BRPC3_contig03589	Not Available	902	Open in IMG/M
BRPC3_contig03594	Not Available	933	Open in IMG/M
BRPC3_contig03595	Not Available	610	Open in IMG/M
BRPC3_contig04596	Not Available	715	Open in IMG/M
BRPC3_contig04657	Not Available	906	Open in IMG/M
BRPC3_contig07425	Not Available	560	Open in IMG/M
BRPC3_contig07681	Not Available	1798	Open in IMG/M
BRPC3_contig07762	Not Available	1217	Open in IMG/M
BRPC3_contig07813	Not Available	688	Open in IMG/M
BRPC3_contig07845	Not Available	650	Open in IMG/M
BRPC3_contig07866	Not Available	609	Open in IMG/M
BRPC3_GDEZLPW01A3NV5	Not Available	530	Open in IMG/M
BRPC3_GDEZLPW01A4EYD	Not Available	504	Open in IMG/M
BRPC3_GDEZLPW01A4RQJ	Not Available	519	Open in IMG/M
BRPC3_GDEZLPW01AE0GP	Not Available	537	Open in IMG/M
BRPC3_GDEZLPW01AUDTL	Not Available	514	Open in IMG/M
BRPC3_GDEZLPW01B1IDS	Not Available	520	Open in IMG/M
BRPC3_GDEZLPW01B1YI4	Not Available	506	Open in IMG/M
BRPC3_GDEZLPW01BAES1	Not Available	538	Open in IMG/M
BRPC3_GDEZLPW01BOTF6	Not Available	504	Open in IMG/M
BRPC3_GDEZLPW01CADJE	Not Available	505	Open in IMG/M
BRPC3_GDEZLPW01CRWU1	Not Available	506	Open in IMG/M
BRPC3_GDEZLPW01CSREA	Not Available	525	Open in IMG/M
BRPC3_GDEZLPW01CT6V7	All Organisms → Viruses	506	Open in IMG/M
BRPC3_GDEZLPW01CTGC3	Not Available	511	Open in IMG/M
BRPC3_GDEZLPW01CYE49	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	511	Open in IMG/M
BRPC3_GDEZLPW01DA3GS	Not Available	523	Open in IMG/M
BRPC3_GDEZLPW01DMUTQ	Not Available	507	Open in IMG/M
BRPC3_GDEZLPW01DVVHH	Not Available	506	Open in IMG/M
BRPC3_GDEZLPW01DYGX2	Not Available	556	Open in IMG/M
BRPC3_GDEZLPW01E6BSJ	Not Available	502	Open in IMG/M
BRPC3_GDEZLPW01EAWLB	Not Available	502	Open in IMG/M
BRPC3_GDEZLPW01EIM2N	Not Available	551	Open in IMG/M
BRPC3_GDEZLPW01EPIGJ	Not Available	536	Open in IMG/M
BRPC3_GDEZLPW01EZFEL	Not Available	519	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
BRPC3_contig01109	BRPC3_00808410	F039427	MSKKVFNLVTGIVGALQTVGVAIVTYTEPAYATAINSAIVIAGTAIIEICNLFTKEDK
BRPC3_contig01113	BRPC3_00607820	F082887	MKKVKKIAKYTTNILGMVSMLIVGINAIDGIDIPNAMVLVQIIAVIQGVIGTYLIQGKLWGGK
BRPC3_contig02008	BRPC3_02329120	F062320	MKKFFEIMGKDILSENFTCRDYVVYGIVAPLVLVLVCVLADSLG
BRPC3_contig02345	BRPC3_00340260	F100165	MKVAIYSIHSDYKKLSTDFEKLKNIVTECLQNDTFDGHGTEIFDLVMDIDYHLDRIYVPLNDTYNDVFIRSKK
BRPC3_contig03583	BRPC3_01434300	F023997	MITLKNWYQQQPEVVYFIQTDFQGDEFMKKLVRSKMSKQQWDKTVDRYSDREIYKVITENHSGELHSWVYFREGE
BRPC3_contig03589	BRPC3_01915460	F023997	MITLKNWYQQQPEVVYFVQTDYQGDEFMKKLVRSEMSKQQWDKTVDRYSDCEIYKVITENVDGKLHSWVYFREGE
BRPC3_contig03594	BRPC3_01275960	F023997	MLNDNLKNWYQQQPEVVYFIQTNFQGDEFMKKLVRSEMSKQQWDKTVDRYSDREIYKVITENIDGELHSWVYFKEGE
BRPC3_contig03595	BRPC3_02897640	F023997	VVYFIQTDYQGDEFMKKLVRSEMPKEQWDKTVDRYSDREIYKVITENHSGELHSWVYFKEGE
BRPC3_contig04596	BRPC3_00966700	F039427	MSKKVFALVSGIVGALQTAGVAIVTYTSPENATLINSAIVAAGAAIIEICNMFVKD
BRPC3_contig04657	BRPC3_01836510	F023997	MITLKNWYQQQPEVVYFIQTDYQGDEFMKKLVRSEMSKQQWDKTVDRYSDREIYKVITENIDGKLHSWVYFKEGE
BRPC3_contig07425	BRPC3_01604270	F023997	MITLKNWNEQQPEVVYFVQTNFQGDEFMKKLVRSKMSKQQWDKTVDRYSDREIYKVITENHSGELHSWVYFKEGE
BRPC3_contig07681	BRPC3_00012350	F023997	VITLKNWYKQQPEVVYFIQTDYQGDEFMKKLVRSEMSKEAWDKTVDRYSDCEIYKVITENIDGELHSWVYFKEGE
BRPC3_contig07762	BRPC3_02854410	F023997	MITLKNWYKQQPEVVYFVQTNFQGDEFMKKLVRSEMSKEQWDKTVDRYSDCEIYKVITENIDGELHSWVYFKEGE
BRPC3_contig07813	BRPC3_02176850	F023997	MITLKNWYQQQPEVVYFIQTNFQGDEFMKKLVRSEMSKERWDKTVDRYSDCEIYKVITENIGGELHSWVYFKEGE
BRPC3_contig07845	BRPC3_00711310	F100165	MEKLTEKKIEKMKVAIYSIHSDYKKLSSDFEKLKNIVTECLQHDTFDSHGTEIFDTVMDIDYHLDRIYVPLNDAYNDIFVRS
BRPC3_contig07866	BRPC3_02940560	F023997	MITLKNWYQQQPEVVYFVQTDYQGDEFMKKLVRSEMSKQQWDKTVDRYSDCEIYKVITENIDGELHSWVYFKEGE
BRPC3_GDEZLPW01A3NV5	BRPC3_02207740	F102225	MNRPHEEEFQKYLWNMHCNGDIFAEYWRPFTYDEWLRNGKPIEDGGVKLSDGTEHLTTFR
BRPC3_GDEZLPW01A4EYD	BRPC3_00797420	F062320	EFLEIMGKDIMSENFTKKEYVVYGIIAPLVLVLVCGLVGSLA
BRPC3_GDEZLPW01A4RQJ	BRPC3_01800380	F023997	MITLKNWYQQQPEVVYFVQTNFQGDEFMKKLVRSEMSKEQWDKTVDRYSDCEIYKVITENIGGELHSWVYFKEGK
BRPC3_GDEZLPW01AE0GP	BRPC3_00110520	F023997	VITLKNWYKQQPKVVYFIQTNFQGDESMKKLVRSEMSKEQWDKTVDRYSDREIYKVITENIDGELHS
BRPC3_GDEZLPW01AIB9K	BRPC3_01507870	F102225	MDIDYKEYLWHMHCNGDIFAECWRPFTYEEWVRNDKPLYDGGVKLDDG
BRPC3_GDEZLPW01AUDTL	BRPC3_02659610	F082004	MAILHLNLTEDHLKLVRFLNIEDKDDDVLTINKKVMLTMQTHILDDVAMVLGLRDKAIKGTEEDADGAAYPDDVEKYMLDTYHYVSDNMYLIETLVHQFVFEGVKPGKYRCKDSEMVWTREE
BRPC3_GDEZLPW01B1IDS	BRPC3_01033750	F102209	MKIPKIKDDESLAMWRERLAREFNLDYKMQELIREVSITSYIHGTNTTLEILKKEGRL
BRPC3_GDEZLPW01B1YI4	BRPC3_00244560	F057815	MAKKIKDSDILKAMAMHLDEESVVFGANGHYANGAYYDITKVSSVFGDKDYNSQDAIDGADSTEAAKKYRTDNDKMDENLQKAIWLKNF
BRPC3_GDEZLPW01BAES1	BRPC3_00511150	F061341	MAKKKNIKVGTINGLDVLKQTRPPQDIPFRTGSYTDKRKKREKVNKNRLDKWL
BRPC3_GDEZLPW01BOTF6	BRPC3_01580880	F079361	MIYFTIAKNECGYLIDSISEDYATLRLKFPDEKIYKSDEPIVSIYILKDQLNEVS
BRPC3_GDEZLPW01CADJE	BRPC3_00378050	F051619	MNNNVNDINWNQVRIDASINIMNAILSSSIMVFIFQFIFKKQIADIAVEYADKLIEELKK*NLSDI
BRPC3_GDEZLPW01CRWU1	BRPC3_01910560	F062320	MKEFLEIMGKDIMTENFTRKEYVVYGIVAPLVLVLVCGLVGSLA
BRPC3_GDEZLPW01CSREA	BRPC3_02861020	F046769	MLTNTSLTIYHKGYDDFERIETWQRFNYENVWMFGGKGASLNKGFTDSNDVQVRIPYDKNENLNIDNFAIGDIIVEGNLSEDIETQQDLEDYLVYNITSITNNTYGINKHIHLGGK
BRPC3_GDEZLPW01CT6V7	BRPC3_02855500	F053097	MFDIKGDKISLNTEDLAIPPFREHFNNAKDKSFALKEIEYVIWLHKWNTPYEAYPLETRASTVAKDIFGDEKYIPTDEVKTLEKRFLEFQETPGTRLLSASQTAAEGLIAALNDYS
BRPC3_GDEZLPW01CTGC3	BRPC3_00614920	F071811	MVTISNSQRDEAVRYLQALADTLAGDDRTQVMNLCRLARRLAKQLEKREKK
BRPC3_GDEZLPW01CYE49	BRPC3_00967520	F061418	MRNETLQALCRDYLGRLRYMGKKHGIDVDSIIRANRKGECSGTEREVQMLSRMVDDERISRTDIPKILGKSYRQSNDDGDFEKVKKLRHVGMYSKVSALLFSS
BRPC3_GDEZLPW01DA3GS	BRPC3_01082310	F023997	MITLKNWYKQQPEVVYFIQTNFQGDEFMKKLARSEMSKERWDKTVDRYSDCEIYKVITENIGGELHSWVYFKEGE
BRPC3_GDEZLPW01DBSBS	BRPC3_01417010	F089629	APKATATEWLNEFGETMPNIVKVTKVTNARAYDYAKAINRQLAKQGDAADFKSDRMSGYEWVVPNIIKRAEKDGSLQMCVTFKENDRTKFETFYIVEDHFATADELNFITEHLYKAPNKSVKQTESGIADEDVVMVRNYKFSNIIAVGQTPQIEEIWSNIE
BRPC3_GDEZLPW01DMUTQ	BRPC3_00462880	F039427	MSKKVFNLVTGIVGALQTIGVAFVTYYEPAYATAINSAIVIAGTAIVEICNLFTTESK
BRPC3_GDEZLPW01DVVHH	BRPC3_02007530	F046753	VLYVITESEVGKMTDNVIMVILGFIGALLVALKPILDLNTNITELKVSIDAFKSSVDKLDSRITEHGKEIDKIKEQVVDHEARLKNLER
BRPC3_GDEZLPW01DYGX2	BRPC3_02689530	F056169	MTSKEAIQIARKYNLEAEVRQELASGLTPEEALSEWDIC
BRPC3_GDEZLPW01E6BSJ	BRPC3_02966530	F093002	EQEFDSQVWRRFDLVTTDTGIETTVMNVCFTTRSVRIFVKNAPPEWMPCKRIEKHTTRKGDTADEGTIIEELHNRILKQNEQIERLKNEKTALAEKISKSYHSEILKAVNAIKEGLTEKKHKIEKN
BRPC3_GDEZLPW01EAWLB	BRPC3_02714960	F023997	MITLKNWYQQQPEVVYFIQTDYQGDEFMKKLVRSEMPKEQWDKTVGRYSDCEIYKVITENIDGELHSWVYFKEGE
BRPC3_GDEZLPW01EIM2N	BRPC3_01891270	F057037	MIVLEFTDDKFGKAMKAISEIGKHSECLAAIFEDLASDSEYGERGHKYYDDDDDMYGSRYGMRRGR
BRPC3_GDEZLPW01EPIGJ	BRPC3_02898000	F039427	MSKKVFNLVTAIVGALQAVGVAVVTYTSPEYATAINSAVVIAGTAIIEICNLFTKESE
BRPC3_GDEZLPW01EZFEL	BRPC3_01197410	F042680	MIVQDIKPLVKGIAQLQYIMAGGIAVYHITSVDGNKYQLEIDLSDKKDVGETAAFKPTEKGLLLMRWIRRANDNDTLIKIV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2077657009: Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 6993

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences