2070309002: Concrete drainage pipe biofilm microbial communities from Ohio, US - sample 12382, Newbler assembly

Overview

Basic Information

• IMG/M Taxon OID: 2070309002
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046156 | Gp0051714 | Ga0011042
• Sample Name: Concrete drainage pipe biofilm microbial communities from Ohio, US - sample 12382, Newbler assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: 454 Life Sciences
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 59718321
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → Acidiphilium cryptum	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Concrete Drainage Pipe Biofilm Microbial Communities From Ohio, Us
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Storm Water → Drainage Pipe Biofilm → Concrete Drainage Pipe Biofilm → Concrete Drainage Pipe Biofilm Microbial Communities From Ohio, Us

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → artificial channel → biofilm material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Ohio, USA
• Coordinates
  • Lat. (^o): 39.8
  • Long. (^o): -84.3
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045179	Metagenome / Metatranscriptome	153	Y
F046787	Metagenome	150	Y
F054662	Metagenome	139	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
MiccSOB_contig04015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → Acidiphilium cryptum	3212
MiccSOB_contig04068	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	530
MiccSOB_contig38790	Not Available	1164

Sequences

Scaffold ID	Protein ID	Family	Sequence
MiccSOB_contig04015	MiccSOB_00069900	F046787	MSESDKPLRQQIDDAMAAIRKQIERLREGPTMGGPSDDRSVIADLQAEYQALAEVRTNLPPHDHPSDHPDDATPA
MiccSOB_contig04068	MiccSOB_01092890	F054662	KVNMREQRRELRLRFDSNAQGGDYYMGRILLTLNVGDVRSTGNP
MiccSOB_contig38790	MiccSOB_00249930	F045179	MIQMTSAFLMSVQLFVIAPRPNVGPKLATVGPCQILALVFDLQ