Sample 2044078019

Overview

Basic Information
IMG/M Taxon OID	2044078019 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046156 \| Gp0051670 \| Ga0010973
Sample Name	Concrete drainage pipe biofilm microbial communities from Ohio, US, sample, 12383
Sequencing Status	Permanent Draft
Sequencing Center	454 Life Sciences
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	264174340
Sequencing Scaffolds	11
Novel Protein Genes	11
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-5	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → unclassified Azorhizobium → Azorhizobium sp. 32-67-21	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium ADurb.Bin341	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Concrete Drainage Pipe Biofilm Microbial Communities From Ohio, Us
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Storm Water → Drainage Pipe Biofilm → Concrete Drainage Pipe Biofilm → Concrete Drainage Pipe Biofilm Microbial Communities From Ohio, Us

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → artificial channel → biofilm material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Surface (non-saline)

Location Information
Location	Ohio
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018415	Metagenome / Metatranscriptome	235	Y
F025775	Metagenome	200	Y
F026170	Metagenome	199	Y
F031548	Metagenome / Metatranscriptome	182	Y
F052685	Metagenome / Metatranscriptome	142	Y
F063339	Metagenome	129	Y
F084812	Metagenome / Metatranscriptome	112	Y

Scaffold	Taxonomy	Length	IMG/M Link
MiccSRB_F31IBB101DY3GL	Not Available	530	Open in IMG/M
MiccSRB_F31IBB102F2D3V	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-5	544	Open in IMG/M
MiccSRB_F31IBB102F8RSO	Not Available	537	Open in IMG/M
MiccSRB_F31IBB102FRMKE	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
MiccSRB_F31IBB102FSYUI	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → unclassified Azorhizobium → Azorhizobium sp. 32-67-21	507	Open in IMG/M
MiccSRB_F31IBB102GLB8G	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-5	535	Open in IMG/M
MiccSRB_F31IBB102GZROH	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium ADurb.Bin341	509	Open in IMG/M
MiccSRB_F31IBB102HQPOD	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-5	538	Open in IMG/M
MiccSRB_F31IBB102JBSEO	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
MiccSRB_F31IBB102JPA5U	Not Available	551	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

MiccSRB_F31IBB101DY3GL

Not Available

530

Open in IMG/M

MiccSRB_F31IBB102F2D3V

All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-5

544

Open in IMG/M

MiccSRB_F31IBB102F8RSO

Not Available

537

Open in IMG/M

MiccSRB_F31IBB102FRMKE

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

539

Open in IMG/M

MiccSRB_F31IBB102FSYUI

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → unclassified Azorhizobium → Azorhizobium sp. 32-67-21

507

Open in IMG/M

MiccSRB_F31IBB102GLB8G

All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-5

535

Open in IMG/M

MiccSRB_F31IBB102GZROH

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium ADurb.Bin341

509

Open in IMG/M

MiccSRB_F31IBB102HQPOD

All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-5

538

Open in IMG/M

MiccSRB_F31IBB102JBSEO

All Organisms → cellular organisms → Bacteria

509

Open in IMG/M

MiccSRB_F31IBB102JPA5U

Not Available

551

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
MiccSRB_F31IBB101DY3GL	MiccSRB2675000	F026170	ARVAKQRSDEEQKAVETILRALAHRLQRLRDEAAMQALRGETDPGVEKGLDMALRELNDLLPRRKRVR
MiccSRB_F31IBB102F2D3V	MiccSRB12980600	F084812	MSKQSNLSLDNWSKGLLISLITKAISSDKDMTPDDIEKLKEIKKQLQEI
MiccSRB_F31IBB102F8RSO	MiccSRB6591170	F025775	MKQLMTFQGFPMVLVVGLIVWAWISVLSVLVASFF
MiccSRB_F31IBB102FRMKE	MiccSRB13054840	F052685	VKRTQAARVRKALDYVKKRLKLDLEFVVEPGEVHEQFGLLDIERSMRGTEDRKVWVVSFDPELVSKESLAALRRHAFHEVLHALTWPLFDEAEAAIRRVPDSSLRKELMDRSIDARENVVYELERKIGPLCFPSLPWVDP
MiccSRB_F31IBB102FSYUI	MiccSRB8906300	F018415	EYLYLGLQDKSYLIPAPNPGSPSDRVHLDDHSVRVGVNYKLPWSLLDIFYKR
MiccSRB_F31IBB102GLB8G	MiccSRB9043810	F084812	MSKQSILKLDNWGKGLLISIISKAISSDKDITQDDIEKLKE
MiccSRB_F31IBB102GZROH	MiccSRB3852270	F063339	TARRVANPKGAQTMNATQNAVGTTDQFHQTWQALMQQLERVLSLAHQRQPNRTETREAVSIAKHLLGKVGDQIDAAIQE
MiccSRB_F31IBB102HQPOD	MiccSRB2380330	F084812	MAKESSLKLDNWSKGLLISIISKAISNDKDITQDDIEKLKEIKKQLQEIN
MiccSRB_F31IBB102JBSEO	MiccSRB11314630	F026170	EQRSDEEQKAVETNLRALAHRLQRLRDEAAMQALRGETDPGVEKGLDMALRELNGLLRAGSG
MiccSRB_F31IBB102JPA5U	MiccSRB2853410	F031548	VTFVGGGVAMADGWKGEGGRKGHAYGHYKHGGYPHHGYCAPRPVYVERQYYPVVIERHVYHPAPSGYFFGMSVVEPGVAFSFGVSGR
MiccSRB_F31IBB102JVOD6	MiccSRB7981440	F026170	MARERTEGEQKAVETILRALAHNLQRLQEEAEMQALRGEVEPGVEKGLAMALRETNNMLPRRKRVK

Scaffold ID

Protein ID

Family

Sequence

MiccSRB_F31IBB101DY3GL

MiccSRB2675000

F026170

ARVAKQRSDEEQKAVETILRALAHRLQRLRDEAAMQALRGETDPGVEKGLDMALRELNDLLPRRKRVR

MiccSRB_F31IBB102F2D3V

MiccSRB12980600

F084812

MSKQSNLSLDNWSKGLLISLITKAISSDKDMTPDDIEKLKEIKKQLQEI

MiccSRB_F31IBB102F8RSO

MiccSRB6591170

F025775

MKQLMTFQGFPMVLVVGLIVWAWISVLSVLVASFF

MiccSRB_F31IBB102FRMKE

MiccSRB13054840

F052685

VKRTQAARVRKALDYVKKRLKLDLEFVVEPGEVHEQFGLLDIERSMRGTEDRKVWVVSFDPELVSKESLAALRRHAFHEVLHALTWPLFDEAEAAIRRVPDSSLRKELMDRSIDARENVVYELERKIGPLCFPSLPWVDP

MiccSRB_F31IBB102FSYUI

MiccSRB8906300

F018415

EYLYLGLQDKSYLIPAPNPGSPSDRVHLDDHSVRVGVNYKLPWSLLDIFYKR

MiccSRB_F31IBB102GLB8G

MiccSRB9043810

F084812

MSKQSILKLDNWGKGLLISIISKAISSDKDITQDDIEKLKE

MiccSRB_F31IBB102GZROH

MiccSRB3852270

F063339

TARRVANPKGAQTMNATQNAVGTTDQFHQTWQALMQQLERVLSLAHQRQPNRTETREAVSIAKHLLGKVGDQIDAAIQE

MiccSRB_F31IBB102HQPOD

MiccSRB2380330

F084812

MAKESSLKLDNWSKGLLISIISKAISNDKDITQDDIEKLKEIKKQLQEIN

MiccSRB_F31IBB102JBSEO

MiccSRB11314630

F026170

EQRSDEEQKAVETNLRALAHRLQRLRDEAAMQALRGETDPGVEKGLDMALRELNGLLRAGSG

MiccSRB_F31IBB102JPA5U

MiccSRB2853410

F031548

VTFVGGGVAMADGWKGEGGRKGHAYGHYKHGGYPHHGYCAPRPVYVERQYYPVVIERHVYHPAPSGYFFGMSVVEPGVAFSFGVSGR

MiccSRB_F31IBB102JVOD6

MiccSRB7981440

F026170

MARERTEGEQKAVETILRALAHNLQRLQEEAEMQALRGEVEPGVEKGLAMALRETNNMLPRRKRVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2044078019: Concrete drainage pipe biofilm microbial communities from Ohio, US, sample, 12383

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences