2035918006: Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2+

Overview

Basic Information

• IMG/M Taxon OID: 2035918006
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0059646 | Gp0051398 | Ga0026400
• Sample Name: Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2+
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 156317799
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group	2
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Face And Otc Sites In Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → wetland area → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Maryland Wetland Ecosystem, MD
• Coordinates
  • Lat. (^o): 38.85
  • Long. (^o): -76.53
  • Alt. (m): N/A
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000708	Metagenome / Metatranscriptome	926	Y
F001314	Metagenome / Metatranscriptome	725	Y
F010131	Metagenome / Metatranscriptome	308	Y
F041843	Metagenome	159	Y
F056993	Metagenome / Metatranscriptome	137	Y
F057409	Metagenome	136	Y
F060387	Metagenome / Metatranscriptome	133	Y
F079969	Metagenome	115	N
F088630	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
FACEMD_F1OL2UU01CGACM	All Organisms → cellular organisms → Bacteria	500
FACEMD_F1OL2UU01CZ5X6	All Organisms → cellular organisms → Bacteria → Terrabacteria group	503
FACEMD_F1OL2UU01DP7PJ	Not Available	563
FACEMD_F1OL2UU01DS60S	Not Available	530
FACEMD_F1OL2UU01DVGF8	Not Available	505
FACEMD_F1OL2UU01EAC2O	Not Available	509
FACEMD_F1OL2UU01EH697	All Organisms → cellular organisms → Bacteria	514
FACEMD_FWM8F5N03F9B4K	All Organisms → cellular organisms → Bacteria → Terrabacteria group	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
FACEMD_F1OL2UU01AVUUM	FACEMDE_1402100	F057409	MKTAAVTVVILALSASQAEGQGLQTRPVPSGNVQSFTFQSPSMGVRFSLNVGTPTGYKPGDGTKYPALIVTDGDFVFPGVNAAAGSLAGTIAPLFVISVGTALDEGEEEHTKRRIYEFSPPGWDRKDTFGQLVENFCRTLKTDDTRCTGGAGQGSSRRSPPR
FACEMD_F1OL2UU01CGACM	FACEMDE_1039240	F000708	LLGMTKPDPTLAQIAAQFTRHSVEKSGGAYLILDRPTANAIARLRPIPGTDRFELFYWSNLKGRWTTFGNLGRMRLMLETAHEIVEKDPMFHISRAR
FACEMD_F1OL2UU01CZ5X6	FACEMDE_3175750	F001314	MWILFEVPCPTPDGTTAESLYDRRVTGITPQMQASAAKHGCRFHRAWYARDGSAFIALASWDTREGASAFFEEWDIEDEPGETAT
FACEMD_F1OL2UU01DP7PJ	FACEMDE_3420040	F079969	MARPVRTAVAPNPLRPVKSHLIEEYNARTNIVRCDCGWSGNADDFAVHRRAVGAVSPS
FACEMD_F1OL2UU01DS60S	FACEMDE_630780	F088630	VGVKIEYHCPTHGKVEPDNLGAPVPTCPMIIRREVDGKV
FACEMD_F1OL2UU01DVGF8	FACEMDE_6230600	F041843	VPGAVRTRLALLGARLPAGAARSAEAAGLLRHLWRVNEPRHLRGEAVGVASRLAALRAARRRFRQARPWNPLRAFGPRLQPVVHAADEEATERATAVVRSLLPVDRRGGRGVRRSFGVRAKAAARRLGGVYH
FACEMD_F1OL2UU01EAC2O	FACEMDE_4390280	F060387	MVCDLLQKIELLHAAGTHFTPANAPEIVRSLYEIMTILDNKGLALLAFDGIIVAATTFAAEKGGVFSRSGLPRWLAIVVIFLSLSAAVACLFVSEVSYPFLGYVTCNAPQSL
FACEMD_F1OL2UU01EH697	FACEMDE_1333920	F010131	DLVAVMSTYAVSGFYAIAVDEHMPAGQPTLERTAK
FACEMD_FWM8F5N03F9B4K	FACEMDE_3263440	F056993	MWILFEVPCPTPDGTTAESLYDRRVTGITPQMQASAAKHGCRFHRAWYARDGSAFI