2035918005: Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2+

Overview

Basic Information

• IMG/M Taxon OID: 2035918005
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0059646 | Gp0051397 | Ga0026392
• Sample Name: Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2+
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 252083467
• Sequencing Scaffolds: 37
• Novel Protein Genes: 42
• Associated Families: 37

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
Not Available	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	4
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylococcus → Methylococcus capsulatus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Face And Otc Sites In Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Nevada Desert Research Center
• Coordinates
  • Lat. (^o): 36.766667
  • Long. (^o): -115.95
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000756	Metagenome / Metatranscriptome	905	Y
F002628	Metagenome	542	Y
F002864	Metagenome / Metatranscriptome	525	Y
F003047	Metagenome	510	Y
F004218	Metagenome / Metatranscriptome	448	Y
F008025	Metagenome / Metatranscriptome	340	Y
F008774	Metagenome / Metatranscriptome	328	Y
F009290	Metagenome / Metatranscriptome	320	Y
F011188	Metagenome / Metatranscriptome	294	Y
F012810	Metagenome / Metatranscriptome	277	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
FACENCT_F37DT1O01A57Y1	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	511
FACENCT_F37DT1O01A84GR	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	520
FACENCT_F37DT1O01AK84C	Not Available	515
FACENCT_F37DT1O01ANVVK	Not Available	540
FACENCT_F37DT1O01B7YPS	Not Available	543
FACENCT_F37DT1O01B87K3	Not Available	505
FACENCT_F37DT1O01BD1L9	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	510
FACENCT_F37DT1O01C0T9T	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	501
FACENCT_F37DT1O01C172A	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	531
FACENCT_F37DT1O01C1GYC	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
FACENCT_F37DT1O01A57Y1	FACENCTE_10532920	F023048	LKADATHWLTDPEYEVLRYRLEAAHAALVEARRNVRLDE
FACENCT_F37DT1O01A84GR	FACENCTE_8514970	F003047	EINGAYRRLSAATENSASADRSLAGYVRRIRLDNAEAILEAKNERTASLYLDGLLDTDEHRNLEDARAEAELELQHARREVERLHLIVRLLGATEGRQGSA
FACENCT_F37DT1O01AK84C	FACENCTE_5455920	F059924	MQATKYKDLVVLLILLDEVESRSRELAERYTELRAMAEAVSDATDLCDLAM
FACENCT_F37DT1O01ANVVK	FACENCTE_8741330	F008025	VASMAGIGKKIKEAAMKAAKDKASGGKKGKHTGGSESGVDKAMRALKTRLK
FACENCT_F37DT1O01AS3LS	FACENCTE_7493850	F101832	EPHPGMTVRVKEGHWKSKYDGMRGTVERRWGHPDHPALDVRLEDGQLELFWFHELDKA
FACENCT_F37DT1O01ATEE9	FACENCTE_3664670	F038844	VASNEMPQPPYVLLFEEVVPDARPLTILVDDRGAVPLFDSEEKAGAFVASTDFGAGLEPVEVSGAGLVRALESVGDDVDYVAINPPPAGESPMKVRMGGLEELVDALQQSQED
FACENCT_F37DT1O01B7YPS	FACENCTE_6157420	F062444	LLLIRSLSGLRPRFALILALVLLASGFTIPAVAQTDQESDQEGESGETDQSGEVLNEGDNSNQCVAVQPVSNTGNAITDLDIVIQLPTGEQQIKRHDRNYVLDLIDELDLDLEDIGSTIELDPEQAVECAQAVDQAATASDDS
FACENCT_F37DT1O01B87K3	FACENCTE_1949280	F039570	LTLCASVDADVASRAGSGLTTLTPDDLRATARPLELLQRALPEGDHRLGIPVWADAVITATSRATHVEVETTLANLCRDHGVSVLCVYDRDGERDRAGTEHLDLAVARHPDELQESRLVLRRTGDTLYVDGEIDASNLDVFGTALRALTDTPLPIVRINLEGVTFLAA
FACENCT_F37DT1O01BD1L9	FACENCTE_9493710	F018678	EAYRLEREGRLIMRPEEDPLGDRRGDTLARILEEEAMKSRTVWASFDWVRRVDLETALEQQKKLAEIVDARQLVVKTAALEEAIGEWTPSGLRRVHPAHAALILASEGGLSLSRATPMPL
FACENCT_F37DT1O01C0T9T	FACENCTE_11168500	F002628	VGVLGQKVFEGRASIGYDHGYDAQKFYLRLALAPKYIEGFVEGCLERIGEDESEDEVLFRDLWEDEAERETVLMVLQAEC
FACENCT_F37DT1O01C172A	FACENCTE_8559540	F009290	RELRQRPAQEHGLAEGGLEFVKFQEDNARAAQEFFATGVRLLQLQGRSAEFVQNWTNDAVEVVREQTEHNARTAEAFARAASRQQESFRTLTQGWVGAYQDFFSPFAFARQGVRAFQDATRQGLEATEQVARQGLRVAEETTEQGLRGRREGHPRGRSKGRRL
FACENCT_F37DT1O01C1GYC	FACENCTE_2715480	F008774	MTDEEIKRFALVLKECERIRALMARDEAALSSGERDEIPIAAAPLDHRPPVLPRATAA
FACENCT_F37DT1O01C4P2J	FACENCTE_4254990	F074187	MMPKFILATVALFLGREGSSGATAHDAMHARTRSRDATRRLRATRMDDPYSHLIYLGLNKRH
FACENCT_F37DT1O01C51K6	FACENCTE_10147890	F059551	EELMGHLGEASGSIRAARRLLAEHASEDDPAHLRLLARLSEALDATEVASREARRQRGIG
FACENCT_F37DT1O01C51K6	FACENCTE_10147900	F018165	KEGKGTVRDDQTVAEMANEVLMRQAKARADRSGEPIEEAMEAVLNTEAGKQLREFRDGPHGDEGVEEWQVGMARERARERVEQLGKHLEEPLEHPTHG
FACENCT_F37DT1O01CAAIC	FACENCTE_10079820	F070937	MPTENGRRSEAMSDKRWYAAEALQANLTNRHHHLRAASEEEAERRMRKRYPGAVAVLVLLEEPWRQSLSRSGPVRSRRHKA
FACENCT_F37DT1O01CJ6V4	FACENCTE_4729010	F090030	AKPQGNDYRRAWFDPGRSLPDGGLTVDAGQGIAARFTWHPEYAGRLLLDVREELVRDISADQRGYALAMEAAEAREDDALATVLRLEKRWSPYDLNWAETDPGQLADRILEWEWQREQRRELFPFSEMREVSTTTDVPPAQASWLSWLRRLFGGD
FACENCT_F37DT1O01CLKE3	FACENCTE_3147240	F016251	MVWASFDWVRQVDLETALEQQKRLAELVDTRQLVVKTAALEAALEEWTPSELRRIHPAHAAIIVASEGGLSLSRAMPMPPS
FACENCT_F37DT1O01CN7U8	FACENCTE_10148220	F002864	RMPREVLEELEAVRLYTRTDVLDIPLLRYVAMEREKPALVVWIDKHESEYGRGLLDGFQAEE
FACENCT_F37DT1O01CP5US	FACENCTE_10285860	F008025	MVSIGNKIKEAAMKAAKDKMSGDKKGKKRTGGSESGADKAKRAILNRLK
FACENCT_F37DT1O01CX3PA	FACENCTE_2669570	F004218	VARTFNLDTKISPPSLLARAKKAAYENGATLLGDERSGRFSHDMAKGEYRMAGRTVVVTITEKHWLLPWPVVEARLRGLVR
FACENCT_F37DT1O01D4B7I	FACENCTE_3688030	F038844	VASNEMPQPPYVLLFEEVVPDARPLTILVDDRGAVPLFDSEEKAGAFVASTDFGAGLEPVEVSGAGLVRALESVGDDVDYVAINPPPAGESPMKVRMGGLEELVDALQQS
FACENCT_F37DT1O01D834C	FACENCTE_10961730	F103859	MNERQRAHITYFLGRVEYWKGRRRDYRPVSMLAARDADHAHPQHSEEKGTEVFDYLRRLKEEQAAVK
FACENCT_F37DT1O01D9FPL	FACENCTE_7679080	F051097	STSGQDITEMPYLRHGINFMAPQTSLPAVWDSYQNVVQNLRAKGLTNGITITSYYEDRQGERYETEWTINPLLLEGSGYSDYKGYEDEVQALQDQAKAVEKISEDIRELKEATNHRHHYGQVGKRSAPSARRTGPVRRARRFL
FACENCT_F37DT1O01DCX55	FACENCTE_887800	F015700	RAVMEAQAKSDGMRLLRAIDPTQAHGQEGTRVDPAKAAHEAGLDAGDVGSDRYHHALHYLIDEAALLGDERTAFDVGEEHPHGFCALSLHPTRGQASR
FACENCT_F37DT1O01DL36L	FACENCTE_7086520	F012810	VNEEKGFEERRGSRPVKRSLSLGAVLLFGAGLLAGAVFGQVAVRVVLFALGAVLFAVRGYLNNGDKVATGVLVFAAAAVGIQTIVHFLGP
FACENCT_F37DT1O01DN9DA	FACENCTE_1270610	F072963	PRTPTLPPDHPGMWRRLVARTHPDAGGDHELFIWTGALRDVVIGGELGSEIPRRPRREAPTARAGDRVPFDEDADPTVLTGRAVAMADAVAEPHGYLLRQVVDCYPSAEGPLCDQQRRGASYKSLAAIGHRVGMTKAERVQWYRIAEAVPLSQRHAGHDPEQAAEARRDSPGLCA
FACENCT_F37DT1O01DPIUH	FACENCTE_4503410	F008025	IKEAAMRAAKEKVSGGKKGKRSGSSGSGGDMARRALKNFLK
FACENCT_F37DT1O01E3ILY	FACENCTE_5093720	F011188	VEDALDTYNIYMDEAPSGGELDGEEGYEVEFRVVPNSTDDGNPEVDAVLAGLDLVDLINLRDSLQQEIDNFALSALETQALASGESEEAR
FACENCT_F37DT1O01EALG0	FACENCTE_6567940	F009290	VEATANNVDKMARTAREMAEAQRDSFEAIAENFAAAQRRGMGLAEGGLEFVRMQEDNARAAQEFFAQSVKLLQLQQKNAEFVQGWTGEAVEVVREQTEHNARTAEAFAKTISSQQEGLRTLARGWTRAYTEFFSPLAYARQGMRAFQQATRQG
FACENCT_F37DT1O01EBW83	FACENCTE_1654310	F040839	MATRSSSGGDYELSDPVGGFADVVRRVVLQPQAFFAGLPRQGSLVGPLVFALICTEVSVLLVGLLTFLDVPGGATTLVAWRDQGFLAFLGGFWWRP
FACENCT_F37DT1O01EIM6Q	FACENCTE_7336880	F066523	MPFDPELDASQPELDASQRRQVERLVRCAGKTCEVCDYEDLSCDDRAVRTMSRGISVRLFCNNRKDHADGVVGTEQPLFA
FACENCT_F37DT1O01EIUTF	FACENCTE_9060800	F044947	MRRMVLLLTAMSAALVLASGVALAVTKIGTNGPDTLSGTNGSDTLMGKGATIRS
FACENCT_F37DT1O01EQBDJ	FACENCTE_1404680	F042710	NAWSEIIMAENSGENCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEVLLEVHGEAKPAKPQFVPKPN
FACENCT_F37DT1O01ER82B	FACENCTE_4910540	F044947	MRRLVLLLTAMALSVLVASGVALAVTKIGTDGDDN
FACENCT_F37DT1O01EV3WL	FACENCTE_547040	F016321	GHGVSEAESRRAGARKRTVRWIESLWEGTNTTSREEDQKEEVLAMFRELAMESRSKGEVREYVPWQPLW
FACENCT_F37DT1O01EV3WL	FACENCTE_547050	F093266	MGNLAVSVMQANNLVAASPEYGALAEAVAYALDLAELGVSIESGAFNLSNTPRPG
FACENCT_FWM8F5N04I11LN	FACENCTE_7292920	F015186	VSEASVSATEAARILGVPEEEARGLADAEGWVPLETVRNRAGAAVIARELALAREEVGRLSGQLKEVRASNARLQREIKDSVEERRRLTNEVLELRAAAEERLMLMERIEHIAGIEQKLAESS
FACENCT_FWM8F5N04I5X0S	FACENCTE_8834830	F000756	MMDRERPGATQGGPIPEAWIGQEVMIETTEVLSSDLRAGAPVYLEDVNDRGIVMMVTRHRDQNRFSRYFYPWGVVGWIRLAEDDERA
FACENCT_FWM8F5N04IIYFV	FACENCTE_6138150	F062389	MHLAENSASNKNNKASHEFTEKSSLLLESYQKAVPKLLGKAESCLEEAIDLINLIVSASEAEGDNE
FACENCT_FWM8F5N04IWWMF	FACENCTE_615630	F056746	GKQGLFELDNGAGATLRAHLVGYDAADLEALVRSFRGGR
FACENCT_FWM8F5N04JNF4F	FACENCTE_3828500	F019791	MYWYNPTSRTSERVAAPSNDDEAVRMLAGHPDSARFVSEYAELRRSGAPIERAMVLVGHEERLREHEHAPVRLAWRERPRRSRPSTVGYELLVAQRL