Sample 2015219002

Basic Information
IMG/M Taxon OID	2015219002 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045212 \| Gp0051220 \| Ga0026406
Sample Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP15 Mushroom Spring
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

2015219002 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0045212 | Gp0051220 | Ga0026406

Sample Name

Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP15 Mushroom Spring

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	45311652
Sequencing Scaffolds	30
Novel Protein Genes	32
Associated Families	29

Dataset Contents

Total Genome Size

45311652

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
Not Available	20
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea → Candidatus Hadarchaeum → Candidatus Hadarchaeum yellowstonense	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae

All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea → Candidatus Hadarchaeum → Candidatus Hadarchaeum yellowstonense

Ecosystem Assignment (GOLD)
Name	Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Ecosystem Assignment (GOLD)

Name

Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → spring water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.538694	Long. (^o)	-110.797972	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Yellowstone National Park, WY

Coordinates

Lat. (^o)

44.538694

Long. (^o)

-110.797972

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F003460	Metagenome / Metatranscriptome	485	Y
F008426	Metagenome / Metatranscriptome	333	Y
F009254	Metagenome / Metatranscriptome	320	N
F014385	Metagenome / Metatranscriptome	263	Y
F015070	Metagenome / Metatranscriptome	257	Y
F028051	Metagenome / Metatranscriptome	193	Y
F033057	Metagenome / Metatranscriptome	178	Y
F039409	Metagenome / Metatranscriptome	164	Y
F047077	Metagenome / Metatranscriptome	150	N
F052617	Metagenome / Metatranscriptome	142	N
F054062	Metagenome / Metatranscriptome	140	N
F055751	Metagenome / Metatranscriptome	138	Y
F056639	Metagenome / Metatranscriptome	137	N
F059996	Metagenome / Metatranscriptome	133	N
F060939	Metagenome / Metatranscriptome	132	N
F065816	Metagenome / Metatranscriptome	127	N
F067777	Metagenome / Metatranscriptome	125	N
F072057	Metagenome / Metatranscriptome	121	Y
F084271	Metagenome / Metatranscriptome	112	Y
F087843	Metagenome / Metatranscriptome	110	N
F089597	Metagenome	109	N
F093360	Metagenome / Metatranscriptome	106	N
F093431	Metagenome / Metatranscriptome	106	N
F096802	Metagenome / Metatranscriptome	104	N
F102264	Metagenome / Metatranscriptome	101	N
F102283	Metagenome	101	Y
F104113	Metagenome / Metatranscriptome	101	N
F106198	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
YNP15_C11034	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
YNP15_C11382	Not Available	1377	Open in IMG/M
YNP15_C11388	Not Available	777	Open in IMG/M
YNP15_C11967	Not Available	867	Open in IMG/M
YNP15_C1757	Not Available	1493	Open in IMG/M
YNP15_C1770	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
YNP15_C1784	Not Available	1141	Open in IMG/M
YNP15_C2834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	2292	Open in IMG/M
YNP15_C4745	All Organisms → cellular organisms → Bacteria	1985	Open in IMG/M
YNP15_C8019	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
YNP15_C8825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	1157	Open in IMG/M
YNP15_C8916	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
YNP15_C9001	Not Available	1383	Open in IMG/M
YNP15_C9162	Not Available	4904	Open in IMG/M
YNP15_FYNB11759_g1	Not Available	882	Open in IMG/M
YNP15_FYNB12572_g1	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae	829	Open in IMG/M
YNP15_FYNB22225_g1	Not Available	566	Open in IMG/M
YNP15_FYNB23701_g1	Not Available	826	Open in IMG/M
YNP15_FYNB30407_g1	Not Available	755	Open in IMG/M
YNP15_FYNB3077_b1	Not Available	794	Open in IMG/M
YNP15_FYNB3077_g1	Not Available	823	Open in IMG/M
YNP15_FYNB33286_g1	Not Available	833	Open in IMG/M
YNP15_FYNB33622_g1	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
YNP15_FYNB34565_g1	Not Available	842	Open in IMG/M
YNP15_FYNB3629_b1	Not Available	801	Open in IMG/M
YNP15_FYNB36693_g1	Not Available	798	Open in IMG/M
YNP15_FYNB3716_b1	All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea → Candidatus Hadarchaeum → Candidatus Hadarchaeum yellowstonense	786	Open in IMG/M
YNP15_FYNB4856_g1	Not Available	778	Open in IMG/M
YNP15_FYNB4914_g1	Not Available	577	Open in IMG/M
YNP15_FYNB5907_g1	Not Available	788	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNP15_C11034	YNP15215200	F039409	MQPKVCLVLLTLGNFNRAWTQILRNLGIDYTLCIATNSTTSASIQTPQGVFSASSPDLRGYFRQFDAVILCDNGSNLSTNSLINYSVFWMNWNAPEDPAFLFFNPHFSTAITESAYNSNFPSDFPIVRPNSSDIEGTLYAADGGSATSTNPLSAALTSGRGACVLFPAENIRAYVMTVCN
YNP15_C11382	YNP15221900	F087843	MHTGRAYTNVYDIGTDWKLIAGYSEYRSFLLVSVQEGEGCYLYFGSEPASQPTLPVQGVRLNANAPYIAFTYPPVQLTYGPVWARCHGPPNETEARVSVIEVSHPPECRGHIH
YNP15_C11382	YNP15221910	F028051	LDSSGRSGRWDIRAPNALTTERQQLTAAEVLRLIRGLPQQRPSQTSLARRYNVELRTVVIDGPAGRYVVLRADPRRFAFYLWGTGFGTYYFSPYEFDDMGFGPFSATATTPLQITEESHPGLPRLEWKYLQQAYITVQLYLIEVP
YNP15_C11388	YNP15222040	F084271	MSGKHKAETVRVMGIKWIWNYTDRKWTSQTAAGNWSLWWNGRAWLLESPRNAIYTLVKQHRYDAMVTAGYKIAEIERWLLR
YNP15_C11967	YNP15232840	F015070	MEELEQLGFIGTADYIDSQDDWRNPEWKSLNQEFYTVVVDDVLDFLNEYYLPL
YNP15_C1757	YNP1534880	F002970	MMFVQYWSATAMSSSSVTDIIELLAGLAVQYNSVVVPVQRLASQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATAPAGYIEDYAAQLRFAWLTRGDVQLLNVSGIVDVVRYGERAYEGVAMTTRFAHLIRAPSS
YNP15_C1770	YNP1535180	F093360	MAEQVLESGVGVEVALEVSVVAVGDVVGVGVLGACELGDGFSCGGDEFGACELLEGAVGFGSCGVEGCGADEVLEVV
YNP15_C1784	YNP1535400	F014385	VKRPSSEVGDWWDLVQLALVRSALEQLSPEEERAVWLYAEGARLPKRERQLAETAIAKVRRMLGLE
YNP15_C2834	YNP1556410	F065816	MKMYGVHRTERSFIMSTDTRAAWVVVSDSNGQPYWERRFGDVFAVVQRVQLNGAPAWRYAAGIGRWATEGYKDTVRSAKVAATKAAHWYALRQDDFKRVGRKLRLLWAQQGIEDVEPDRKYPYPWRAEHWYEMGLCWTWDYDLTMWRSGAWRLWYNKGTGWMLRYPDDSIQVLHVEYRHDAMREAAFWINLALEE
YNP15_C4745	YNP1594380	F056639	LPLPDQLYLAFASLVTMTALVIHYALAKSPVWVGAVGVGVVIVMFFAPMARPMLALHSLAQTLTAETPLHIGVSRLTPAHLVYGALVYGVGRAARASAVYGILPALLVATIAQGTVFRGAPTAILLWGYSVCVGALWILCTLAIVYGQATRLYGASRDWVRWQNILALAAGLLSASLLAVSVPAPVPVPALTAWVHTPLWWWGFVPLLGIVSGLAVEFHLLWTLSHIVGMLLYAGLGAAACLRLLRGVWRSQEQPLNAETEGWE
YNP15_C8019	YNP15157290	F093431	SATADTPDSPRIDAELPYQPILPGVIHQNSNFSTTITFEDESQYTVSWQIGGWEDVSTYAGSVGCYRIREEGSWSRPLPFTEATVAATAWFSPQLMNYARIETRESGWIGANPVEYTLTYLLRRTNVPLRPPTGAQAR
YNP15_C8825	YNP15172740	F072057	MGDKGQIGKNGSNGNGQADMFCRTVIAAVAAMLALRLCQYVRRWLQG
YNP15_C8916	YNP15174430	F059996	VQTILRNAAQEMGVQVSPENFACGVFTNGSDGKMSVLINAAIANTQNLTLDDLRSGADVMFCYLKSDDGSRTFFTVKIRQVNNRWVAELRNLAGETATVDALVEPDQTVILGKLTLDWDGDPCIDYRLGPIIIKGCPNLENLFFDRITSGGWED
YNP15_C9001	YNP15176140	F055751	DAGLLTIALAGRGGCCGVQLPPQTNIKIEKPDANLREIIEQSTDEFVTVRYHRKRFLRDQTLPVIDFRADSTLTWRFPETTRVVDISKAPNRVYGQYRGYWTDHLTATTSILSLESRRQQLTWRVASVGEYGSKAIAEARRDEAAIALDRQIAPLTVELDNSRYELMMREGVTVPNWAADVSDYAIVPGYYRNAKITSRTITRERTTYTVSFNPDEFVTVLR
YNP15_C9162	YNP15179290	F060939	MSQWRLRVWFQDASGSKSFTGAWLRSPNEAAIFAFVEALRGLSDAQITHVDISRRYPYTSQVPAGRDRGIGMFVQGAYNPDNPGVADAFPMWVPESEVSAIRDLWGYPITARGFVSRAGYNMDEVLPQDGEPQSLDNEYPDDSDDYYLIAIRRNFWHKLLRDARAYNTLSFTLPDAQARRVRLDIRDLFRGVPMQEILQRLDTIIQLLQGGSANIDEVEYLLMQLIEALGAP
YNP15_FYNB11609_b1	YNP15502580	F102264	PERNRKGQRVLQDFYEYGLARTTDIATAPPPQTPLECLQRIADVRAVHTLIAGATARLTWKVAKRYNGTEIPDEFRSRNLDRHAGHIVADYLVLGQAFFSENFTYISPLEAFPDTALTIQRPNGTPLQSAFWLMRQFWELNRAETQILSLMGAAAFLYPKDSNMPPNRRRTGSTGGKNPPRQSPEKGGVGGE
YNP15_FYNB11759_g1	YNP15515870	F008426	RLKEAYFEAQREAIAVLRELRRKDFRTLSNAERKRADALFLRGANEHACCLVRQLKEYVPDLIRDATWSYLFKRACDYRNPEAEDENSNRQWYAFSTGNIYAILDPENFHLAEWELVRSFFSGELGELRLDIYFYDREYRAVKSSVAFSKTPFFVLKMYTPLIGESKQDYLKRMTRDLKHELKLLAEPCSHRQPEILPRFLNELKRLGYEFHNPRNAIPAILALAATTTRSATPRGEISE
YNP15_FYNB12572_g1	YNP15590860	F067777	MPKLTIEVDPKAWQLLHQQAELRGLTPEALAQQLLLGELRARGKRSRRRDMDNESLHAASLPRGSLQRVFTTLERIDTLLPLDTPPPSREEVDSYVEQERASCGELRRGLSRCIESI
YNP15_FYNB22225_g1	YNP15346520	F003460	MPKASRDERYFHDVQHAYEALNEVLSPRGLYAEVGILLVANLRRASELRDVSIELIIRSRAGGSPVWRASESLKVPGRMKMRSVASVLFGLMMRAAYDVEAQISLPGDDAPRGPGRARILPRA
YNP15_FYNB23701_g1	YNP15581840	F033057	MAFVYGRVAPTDAEYKAEIAQELIRRAEAEWLYYIGRDWRDQRYTPAIAGALMAAGNAEWLYRAGRDWPDNRYIPDIAEALVKTADAEWFYLAGRDWPDKRYTPAIAEALIAAGNAEWLCYAGRDWPDNRYTPAIAEALVKTANAEWFYLAGRDWPDKRYTPAIAEALVKTGNAEWFYLAGRDWPDKRYTPAIAEALIAAGSAEWLYRAGRDWPDKRYTPAIAGALMAAGNAEWLCYAGRDWPDNRYIPDIAGALVKTA
YNP15_FYNB30407_g1	YNP15444500	F002970	MSSSTVINIIEMLANLAVQYNSATVSVRRLTTQTTWVDAAQLPVRIIPALGGLRLIEGGVYTATRAMRAVWEIDDLLLVRDVGMGRGVADTATALVRYIEEYVALLRFAWRVRGDVQLINVSGMIDVVRYGERAYEGVTMTVRFAHLVRAPVGVRRG
YNP15_FYNB3077_b1	YNP15278050	F054062	MGKLRELSWRDFCDGLDKDPPDEVQKEAEQVFFDHVFPEALLTFFQNASEVLLLYEAALSAPAMKPIADAKFNELFKQNPIPFYESLVPTLKNLGAEPEKATFLEICAFLTTYKS
YNP15_FYNB3077_g1	YNP15237780	F047077	MTEEIKQIQKAGEELLATLHATAATEEETKTLDAISKAAAHIRQQLRERMPSAGTRIKVSDLRSARKLMQRYVQKTTVGANTPREYIGEAFYVTRQLVIEFIQDYLRTETLDVLAEITQVRLNPFTGAPAIVGEGGEKPTMATTPQRVTSNYQKIAFGDVITDEVLLAYPDIVDFLIWHGAYRLEVFLHNA
YNP15_FYNB33286_g1	YNP15750790	F089597	MPRRLSWDEVASIIDREAVERYGRYLRGVVEGETYVPKATTTPSLVNRSIVLGVIYDWCRRRYRHRPLLATVRAFSWVARYCYPFHPVFARLGIGNEDVVEALEWIANDSYSLRFAPATYGVTIVCEHRNGDRRERHYFAPVPLVAPGIDDPTAVPFRLRMATQLVMQAALRAICVAEDDGSYDEIAIRITVRDLL
YNP15_FYNB33622_g1	YNP15541820	F052617	EGDALVLRRPSDGVEFALVLGGGRPTGLRWATERLRAAYTLEAFHPDLRQLPTHVSVAIEQAHRRIRAAFTLEQIADNAVAPSLPVGVSVNDFRLSPVNDARDCRRVGVCYEWRGRLPSAWQLRWLSRWRGTISHPRSSDAPCNGGSCTLS
YNP15_FYNB34565_g1	YNP15737760	F014385	MGVQLGVIHSESPDWWQLVQLALVRSALEQLSPEEERAVWLYAEGATLSPKQRTLAETALQKIRRMLGVNAP
YNP15_FYNB3629_b1	YNP15332020	F009254	MRLRELEAFLRNFLARVIGAPIVSAPTEMPVGSAVAGVLSLQSREAGKAVGGMRAVYQLELLASDAIPDAARRKLYETLASQIIRTELAAERDWLPMLDYQVFLEELSIERLRVRLEVEWDADR
YNP15_FYNB36693_g1	YNP15667080	F096802	MALCVRYLHRHPLELSHLPAAALADLIALASAEADAYAEALP
YNP15_FYNB3716_b1	YNP15304350	F102283	MRVMLELFVPRNEDVPVEYRLWDADGRKVLAVVQVPSAGRSPLASALLSLPELFNQLAHAGVRELGWRGFVPSGRLRPASAWLIYGDVREPDLIEARSRALQVAEASGIRLDPDPAEGKVGKLGEVDLAKLLSAGNESSGNKGSVNTSSVRARLK
YNP15_FYNB4856_g1	YNP15321990	F106198	MLYDTDFNTQLLIRQRFYFVPGNPDVFTPIPPTIEKRLRPFKPKLGIPKVLPFKPRECTACFNNPQVQQGFSEYKVFVPFKPTDGKLKQSIKEIMQLPNVSGVKYSGETHVRGTKRLI
YNP15_FYNB4914_g1	YNP15332660	F084271	AETVRVMGIKWIWNYTERKWTSQTAAGKWSLWWNGRVWLLESPRNAIYTLVKQHRYDAMVTAGYKIAEIDRWLLR
YNP15_FYNB5907_g1	YNP15311250	F104113	GKPLREPVWTNIIIPPEKAAELGLEIKAKSLRTDFQHITEEELAQYGLHVTDSGTVGLTISYDAVGLNKASARQLRSEGLPPRTVYPASSVTNIQLDMSDNLITEFDTVDDVKQTEGYRPPSAVSNFVNRMFNKDKASASVEKAKQTLLDLSLF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2015219002: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP15 Mushroom Spring

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences