NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2014613002

2014613002: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 1_Upper_euphotic_10m



Overview

Basic Information
IMG/M Taxon OID2014613002 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0056617 | Gp0051026 | Ga0011123
Sample NameMarine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 1_Upper_euphotic_10m
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size7482595
Sequencing Scaffolds4
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine photic zonesea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Pacific Ocean at depths of 10m to 4000m at the Hawaii open-ocean time-series station
CoordinatesLat. (o)22.45Long. (o)-158.0Alt. (m)N/ADepth (m)10
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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