Scaffold SRS050299_LANL_scaffold_26204

Overview

Basic Information

• Taxon OID: 7000000632
• Scaffold ID: SRS050299_LANL_scaffold_26204
• Source Dataset Name: Human stool microbial communities from NIH, USA - visit 2, subject 763982056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51103
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (32.56%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
SRS050299_LANL_scaffold_26204__gene_45456	F042095	N/A	MAKTLYKYEASSSKFVWFTTWDRALRNYYTDDYNYVPDPVVGDPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIHYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIHPDPPDMWNYFDINTLPFFEVDKINPNITNFDFLKDWVSGERRTGWNDDNMSGRGLDHLTGFSVYHSNSIRVDKLPDYIYEMRSIIWFVMDCSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSMYSSQYPDENQRPSGTEQVPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE