Scaffold SRS024435_LANL_scaffold_20298

Overview

Basic Information

• Taxon OID: 7000000624
• Scaffold ID: SRS024435_LANL_scaffold_20298
• Source Dataset Name: Human stool microbial communities from NIH, USA - visit 2, subject 159571453
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60235
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (24.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F058555	Metagenome	135	N
F075481	Metagenome	119	N
F083452	Metagenome	113	N
F093883	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
SRS024435_LANL_scaffold_20298__gene_48269	F075481	AGAAG	MKRLRISLKAVFCLGLSLSLSSCGSRRQVSETSIDSRLISRIETMIDEVMDRKIVEIKTSDLNADIVITKRKFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSVGVNKKRNDIKDLDNKIDIKSKDVDDKKESKWPTVWIVCGILMILLVLVYILKRIRIL
SRS024435_LANL_scaffold_20298__gene_48273	F042095	N/A	MAKTLYKYEALSNKFMWFTTWDRALRNYYTDDYNYVPDPVVGNPFNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGHDSYHIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYVNINTCKMTAFPIVDIPDLESLIVSHTRYVNDGIPVDRLSRSKKLIYINLSDIGQRMTEMPEAITSKTEVDHLNMFNILDLRDIESSGIRNIKNMKNLQALDLSSCYLDRYIKEFNDLPKLTSLNITSGPLDMCNYFDINTLPSFEVDKINPNIAYFSFLEDWKNGERRTGWNDDNMSGRGLDHIANFNVSHSNGIRVDKLPDYIYEMRSITRFGMNCSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSMYSSQYPDENQRPSGTEQASEGFVKGQSNGSPATPMEKIYVLKNNYAQIWTIKPE
SRS024435_LANL_scaffold_20298__gene_48287	F093883	N/A	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSPSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
SRS024435_LANL_scaffold_20298__gene_48294	F058555	N/A	MKLVYSQKIKSTMGTKIGILHIMKSNFDKIITERYTPRNIQAKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKSLDSNTRRRMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKDVLSMCCKTISDLYDEVKKNNGIINTKDRKNVNIGHLRLSYRGTIMHIIIAEDYIRDVFLGVKGAEMSKA
SRS024435_LANL_scaffold_20298__gene_48310	F083452	GGA	MSGRVKIKSKDKDKKPKIDVFKIIENRFKNMNELRDMIDMDPKKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR