Scaffold SRS056259_LANL_scaffold

Basic Information
Taxon OID	7000000297 Open in IMG/M
Scaffold ID	SRS056259_LANL_scaffold_5938 Open in IMG/M
Source Dataset Name	Human stool microbial communities from NIH, USA - visit 2, subject 764325968
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

7000000297 Open in IMG/M

Scaffold ID

SRS056259_LANL_scaffold_5938 Open in IMG/M

Source Dataset Name

Human stool microbial communities from NIH, USA - visit 2, subject 764325968

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29349
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (37.04%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

29349

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (37.04%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F075481	Metagenome	119	N
F106193	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
SRS056259_LANL_scaffold_5938__gene_12006	F106193	N/A	MGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASKSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAIYIKP
SRS056259_LANL_scaffold_5938__gene_12011	F075481	AGAAG	MRLRISLRAVFCLGLLLSLSSCGSRRQVSETSIDSRLISRIETMIDEVMDRKIVEIKTSDLNADIVITEREFDTDKDVDPTTGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGVKDIDKKTDIKHKDVDDKKESKWPIAVTSISVLLILLGLIYLLKKMKVL
SRS056259_LANL_scaffold_5938__gene_12014	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDNYRIIFRSLAIQHMKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTAFPIIDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLIYIDLSNVGQRMTVIPEAITSKTEVYYLNMFNILDLRDIESSGIRNVKNMKNLQTLKLSSCYLDRYIKEFNDLPKLTLLYMAHGPSDMWNYFDINTLPFFEVDKINPNITDLFFLNDWVSGERRTGWNDDNMSGRGLEHLTSFSAINSNSLRMDKLPDYIYEMRAITRFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDTIFPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQKWTIKPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold SRS056259_LANL_scaffold_5938

Overview

Ecosystem & Geography

Associated Families

Sequences