Scaffold SRS050422_LANL_scaffold_85963

Overview

Basic Information

• Taxon OID: 7000000145
• Scaffold ID: SRS050422_LANL_scaffold_85963
• Source Dataset Name: Human stool microbial communities from NIH, USA - visit 2, subject 763536994
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7167
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
SRS050422_LANL_scaffold_85963__gene_150956	F042095	N/A	YTDDYNYVPDPVVNNPFNTFVEFRSRKPGIANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIEICKMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLIYIELSNVGQRMTEMPEAITSKTEVYYLSMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLNITQGPSDMWNYFDINTLPFFEVDKINPNITDFIFLDDWKNGERRTGWNDDNMSGRGLEHLTSFIATNSNSLRMDKLPDYIYEMRAITRFNVNTSTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAISPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPA
SRS050422_LANL_scaffold_85963__gene_150963	F106193	GGA	LNFKDIIMGCNTCKEKALKAERERIERSMMNRPSSTVVSDREYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAIYIKP