Scaffold SRS046623_LANL_scaffold_3765

Overview

Basic Information

• Taxon OID: 7000000056
• Scaffold ID: SRS046623_LANL_scaffold_3765
• Source Dataset Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 604812005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1506
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F051214	Metagenome	144	N
F071329	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
SRS046623_LANL_scaffold_3765__gene_2968	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACE
SRS046623_LANL_scaffold_3765__gene_2969	F071329	AGGA	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDETVKAVNEARDHIEIED
SRS046623_LANL_scaffold_3765__gene_2970	F018385	GGA	MMAEYENQWGPYKEHSIENDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDSKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVKCLT