Scaffold Ga0370497_0086629

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0370497_0086629

Scaffold Ga0370497_0086629

Overview

Basic Information
Taxon OID	3300034965 Open in IMG/M
Scaffold ID	Ga0370497_0086629 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_04D_17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	733
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	64.9141	Long. (^o)	-147.834	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019349	Metagenome	230	Y
F027932	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370497_0086629_134_259	F027932	N/A	LVLLVAVQLSVLGSYLPPVLKTPALAVPPQMIISLPLQTAV
Ga0370497_0086629_431_655	F019349	AGCAGG	MRLVAVQLSVLGLYLPPVLKLGPLAPPQTIISLPVHTAVLSSRGKGALTVLVAVQLLLLGLYRPPLFRKMSERG

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