Basic Information | |
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Taxon OID | 3300034817 Open in IMG/M |
Scaffold ID | Ga0373948_0141672 Open in IMG/M |
Source Dataset Name | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 595 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil → Populus Rhizosphere Microbial Communities From Soil In West Virginia And Oregon, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia, United States | |||||||
Coordinates | Lat. (o) | 39.6589 | Long. (o) | -79.9058 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F099532 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0373948_0141672_180_587 | F099532 | N/A | MAPVSLVLGRQGTRAAANGLLGRVHIVDLAKEREERTFDNTPEAPGHGMHAEMRRSLAFSQDGAWLFAPDMHDRGVRILDLANGKAYPVFTGAAPFYKAMSISVPASLVALLRPGDAQGRGPYGLEVWRLSYRGR |
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