Scaffold Ga0373948_0046262

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0373948_0046262

Scaffold Ga0373948_0046262

Overview

Basic Information
Taxon OID	3300034817 Open in IMG/M
Scaffold ID	Ga0373948_0046262 Open in IMG/M
Source Dataset Name	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	924
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil → Populus Rhizosphere Microbial Communities From Soil In West Virginia And Oregon, United States

Source Dataset Sampling Location
Location Name	USA: West Virginia, United States
Coordinates	Lat. (^o)	39.6589	Long. (^o)	-79.9058	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043463	Metagenome	156	Y
F054906	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373948_0046262_2_493	F043463	N/A	LIARYAAARFTNWRAREFDEADRFVIIFLAVLPLNALLAGGYEKDVIMSPAGLFYGAAAYFVFRERLAGVSVVSIAPAVALLLAVGWSVRFVGIHESLRARALSVREEWAYYDDWVREQPRPMPLTPEEQAIKQHLYDDAVLRAPRAPQPSLGAAEHLFDFTQ
Ga0373948_0046262_490_924	F054906	N/A	MSSREAEGTLKSFALSGLAGRIFVPPLVAFLLVSLYVVGEAVGYRGLARPEVETVAEAAALGQAARTLQLIEEGQDPNQTQHVRPNFLDAGEYELKPLEAAILGRHAELVRLLLRIGAASFDRSRASCFARVRLPEVLPDLGDSG

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