Scaffold Ga0373948_0003925

Overview

Basic Information

• Taxon OID: 3300034817
• Scaffold ID: Ga0373948_0003925
• Source Dataset Name: Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2324
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil → Populus Rhizosphere Microbial Communities From Soil In West Virginia And Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: West Virginia, United States
• Coordinates
  • Lat. (^o): 39.6589
  • Long. (^o): -79.9058
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021616	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373948_0003925_909_1157	F021616	AGGA	MVGDADASSVEPVVNPGLGEARRRRLVRMTKEQIAGRAGPLRQVRHRDRVVSPLALELECRKLLQRAPACDRDHRDVAGLRG