Scaffold Ga0373573_0299627

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0373573_0299627

Scaffold Ga0373573_0299627

Overview

Basic Information
Taxon OID	3300034782 Open in IMG/M
Scaffold ID	Ga0373573_0299627 Open in IMG/M
Source Dataset Name	Sediment microbial communities from coastal wetland in Texas, United States - D0606M02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	518
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon M8B2D	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Coastal Wetland In Texas, United States

Source Dataset Sampling Location
Location Name	USA: Texas
Coordinates	Lat. (^o)	27.8962	Long. (^o)	-97.0386	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098191	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373573_0299627_282_515	F098191	N/A	MVLKMKMNIDEDTTYEVRLLCRNCKTDWIKDIEKGTYVRYEKDNNYMIKADDSYKNKKLFQCPNCGSHTKIARLPLI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.