Scaffold Ga0373573_0006874

Overview

Basic Information

• Taxon OID: 3300034782
• Scaffold ID: Ga0373573_0006874
• Source Dataset Name: Sediment microbial communities from coastal wetland in Texas, United States - D0606M02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2908
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Coastal Wetland In Texas, United States

Source Dataset Sampling Location

• Location Name: USA: Texas
• Coordinates
  • Lat. (^o): 27.8962
  • Long. (^o): -97.0386
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045104	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373573_0006874_2094_2441	F045104	N/A	VLFDTLTQHQRALSLANTALAHTTLLDWLVEQNAHLVIPDTLLAAPCLNQASQIPVAVWVAPSPLLEAIRLAAGLTTRPPKQTAALLARWPTAPALRPFLRPLITSHLPDQFSLL