NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314801_130541

Scaffold Ga0314801_130541


Overview

Basic Information
Taxon OID3300034676 Open in IMG/M
Scaffold IDGa0314801_130541 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)591
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005880Metagenome / Metatranscriptome387Y

Sequences

Protein IDFamilyRBSSequence
Ga0314801_130541_3_590F005880N/AFQVTLRQLALRPACTARTWHPKPARREPLAPRCWFCPTADQCAGARLLPIPVEAHFSMRPFALQHRGLASPPIPVTASTFPAYIFETILRSDPARSAPHSRPRSAFCDLTRHDLRMEPVARSNLRTRDSPPDFGSPPGSLDPSGSKPSTRLRTTKLTLAGCPIFLRSPQRGNNFSHHSAPRIIGPDPLLPARLAVL
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