NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314792_262289

Scaffold Ga0314792_262289


Overview

Basic Information
Taxon OID3300034667 Open in IMG/M
Scaffold IDGa0314792_262289 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)508
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082737Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0314792_262289_1_507F082737N/AAGRISRLAPRSRYFSVSDSMLGGTPASLPVRSQNLEADFHSPTTTRLLPDDRGGVRVPALPLRFCDTISVGPVRSGLHPRPVSRTAWDFCNQNPLPSDLAPLLPAALNRRSPSGHSAPPDQSTRSRWPTGNLPSETPDLPSLPTGGRIRYQHQRIIVPAPLRLCQLAVP
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