NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314792_231861

Scaffold Ga0314792_231861


Overview

Basic Information
Taxon OID3300034667 Open in IMG/M
Scaffold IDGa0314792_231861 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)532
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010545Metagenome / Metatranscriptome302Y
F024197Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0314792_231861_1_330F024197N/APDPDGSLAAALEHIDASAYRPSADVAAVTSEKSRRLRGAVIRNASLSSATDDTPTGGLAFTNYVLRLPGEDKITGTDDDWVVRDGMVMRLADVAKGGVGRSVSASALAP
Ga0314792_231861_334_531F010545N/AMSLLDRFRKKPEDEASRIERLSKTGRMADGRIIDADSDNDGRITQVTYTYILAGVQYESSQALSLS
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