NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314787_012397

Scaffold Ga0314787_012397


Overview

Basic Information
Taxon OID3300034665 Open in IMG/M
Scaffold IDGa0314787_012397 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R4 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1127
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052694Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0314787_012397_40_567F052694AGGAGMSTRFRSVLTLVVATLIVGTSTAWAGPLAKGANTHVVDDGTVSWTLPAGQCPAAPDGLTGSGERHRVTITKVNADGSTTIIINDVVRGTAWDATGTYKFVYENHSIDQIPAGGGVHQISMEDNFILNGNGSVGHLAVGFNWAWTYTDPNGPIDVLPLANLVERSTRGEPLLCDPI
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