NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314780_158098

Scaffold Ga0314780_158098


Overview

Basic Information
Taxon OID3300034659 Open in IMG/M
Scaffold IDGa0314780_158098 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)564
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037264Metagenome / Metatranscriptome168Y
F039161Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0314780_158098_310_513F039161AGGAGMWWECSECGGYVERFRAPALCRECGTAGVIFVPAEVEDPTATDPDVDSLRTAWLRAGLEQDRPMLAA
Ga0314780_158098_8_307F037264GGCGGMSKRQRPKEAKASETAMDLAHLRRETRTALELAVVALTPSELIDRLAASAGLLEALVGLPTDSQPVAALVPTVLTRARTALDDWSKWQHEHLEKRMPRG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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