Scaffold Ga0326746_036977

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326746_036977

Scaffold Ga0326746_036977

Overview

Basic Information
Taxon OID	3300034655 Open in IMG/M
Scaffold ID	Ga0326746_036977 Open in IMG/M
Source Dataset Name	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 494_2800
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	524
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	14.8216	Long. (^o)	-44.9298	Alt. (m)		Depth (m)	2800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025764	Metagenome	200	Y
F034595	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326746_036977_139_405	F025764	AGG	MIEKITSVKDLISVDRDYKDSSRSKASVCYGGLAGMLVATVKWAGISIKEDRTAYALELLERAMGERKRADEVVKRYNRRFNAESEKV
Ga0326746_036977_402_524	F034595	N/A	ELISLIKEIKITCESNRSDPLSPINSKTLKFILRLIKGEI

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