Scaffold Ga0326741_001871

Overview

Basic Information

• Taxon OID: 3300034654
• Scaffold ID: Ga0326741_001871
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4602
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9628
  • Depth (m): 2244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F013596	Metagenome / Metatranscriptome	270	Y
F016759	Metagenome / Metatranscriptome	245	Y
F055296	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_001871_2716_3072	F007837	N/A	LVSGLAVLPKVSARNLDLKLTQVTDLKTTAAPLVINYPASYQSLSNSVIIDNQDAANAVTVRFNRSVNVITIGPSNFRTFNDTWNEQIDLTGPSTNTQVTAQISPLTQISPYGQGVTN
Ga0326741_001871_3075_3443	F016759	GAG	MEPIQRQMNNPIAGVVGTPALLQDTVTLLTFIQLNVPNTILDMYNSPDPGAATDFYTYELQKNSISTGRNFFSTAMSTASAGRAAVGPIRLASGQLQMSGTPVGALAPITDQNIVIKFSNGF
Ga0326741_001871_562_1008	F013596	N/A	MEVFAESLTILSIVVSMSVCAVLIARIYRKNSALDPKITNKLRKQQEEYISEVERKNRSLQNKLNSMQKGPVLSETGDLDSVLPELVGQLDGILPKWATKFLKSNPDIVNTVVEYAKSNPDKAKELIGKFVKIGPSAKASNDATLLGL
Ga0326741_001871_91_402	F055296	AGGTGG	MAKYDKFREIQQSRNKKIGQRLNELIDKEVKEADPQFKELTAIRSKDAPDIIVPNPFVLDQFHSLPKWIEYLQTLTKKQHGELYLHLIALKNITQDFEDYRLD