Scaffold Ga0316599_227188

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316599_227188

Scaffold Ga0316599_227188

Overview

Basic Information
Taxon OID	3300034653 Open in IMG/M
Scaffold ID	Ga0316599_227188 Open in IMG/M
Source Dataset Name	Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_03R_16 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	501
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	64.9141	Long. (^o)	-147.8344	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010305	Metagenome / Metatranscriptome	305	Y
F058155	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316599_227188_2_145	F010305	GGTGG	MKRAEKPHSKSRRREALDGPATRPETPLAVENGVGKLTAPEKGAPNVS
Ga0316599_227188_291_452	F058155	N/A	LLFNHSPAVSFLTSPMLGSFSRGLPSLRVLPGANALFVPPFGVFLLADLRFDA

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