Basic Information | |
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Taxon OID | 3300034652 Open in IMG/M |
Scaffold ID | Ga0316598_113912 Open in IMG/M |
Source Dataset Name | Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_02R_16 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 754 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Alaska | |||||||
Coordinates | Lat. (o) | 64.9142 | Long. (o) | -147.835 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F072801 | Metagenome / Metatranscriptome | 121 | N |
Protein ID | Family | RBS | Sequence |
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Ga0316598_113912_2_472 | F072801 | N/A | LAGDSVRVVVRAPWHTPLATLVATPATSGTDLSARTRPAGRLFLCGATAAAIDTTAHTITVDVNFGNWRGLYSLLGQPVHQTFTYDAGTVFLKWRHGVPIGVDPSVIHPGDPLTLRVFGPTWNTPLPTLLATPLWRVKLGEPMKLALRDGAEFPGT |
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