NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316598_113912

Scaffold Ga0316598_113912


Overview

Basic Information
Taxon OID3300034652 Open in IMG/M
Scaffold IDGa0316598_113912 Open in IMG/M
Source Dataset NameMetatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_02R_16 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)754
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9142Long. (o)-147.835Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072801Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0316598_113912_2_472F072801N/ALAGDSVRVVVRAPWHTPLATLVATPATSGTDLSARTRPAGRLFLCGATAAAIDTTAHTITVDVNFGNWRGLYSLLGQPVHQTFTYDAGTVFLKWRHGVPIGVDPSVIHPGDPLTLRVFGPTWNTPLPTLLATPLWRVKLGEPMKLALRDGAEFPGT

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