Scaffold Ga0315299_17478

Overview

Basic Information

• Taxon OID: 3300034481
• Scaffold ID: Ga0315299_17478
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_Tmax_1102 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 606
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0136
  • Long. (^o): -139.5971
  • Depth (m): 479

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062832	Metagenome / Metatranscriptome	130	N
F074005	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315299_17478_409_606	F074005	N/A	MRYEVSKMVQIKTIDELEALYYGYNRNLLRKADAPATTSTAGVFNAIYGAYAWAQLNLEANAFGIM
Ga0315299_17478_6_428	F062832	N/A	VKALETPTDLPLAPAGTTGSDNDVGADVTAPAQPYPQGDQAGLDDDRVDDNKPANDAAPSMQEKPLNKSEPKLVAKSQHTFSTETPRPNAAIEKAGGSQTDFSPILKDARAEGFEGLSNVARNILKGKYYTPTDDEVRGF