Scaffold Ga0348337_011486

Overview

Basic Information

• Taxon OID: 3300034418
• Scaffold ID: Ga0348337_011486
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5057
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.149325
  • Long. (^o): -75.288339

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F021759	Metagenome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348337_011486_2451_2708	F021759	GAGG	MDAGLAVVFAAVVAALGGIIVAIIEMRNLAKENRKDHAIVQKRLDNLIDMVGKQSAKLTSHLDWHLTKEPSKDLKVKQVATRKKK
Ga0348337_011486_2705_2968	F006986	N/A	VTAVLVTWHDAHSGSESWVNIKDLDLDPAIVQTVGFLLATSDGGKPDHVTIYQSRNEDNIDHVLHIPVKMVVGIKVLMDLEINSQDR
Ga0348337_011486_3094_3666	F005528	AGGA	MRILTAILATLTSLTISLGIAQAASAPAHTSDAVNALQPLWQPPMADRLDPIQPIRFRHGDVSWLPSLAKQAGWPDHTIGKLTELVLRESGGCPNRRGGDKVDADCNITGVSEWNHRSDTGLLQINGVNYDKSRNKWAAVCRQMNICTQEPLLDPLTNLKAGLVLYRISGFEPWNPCNWRVCKASTTSVP