Scaffold Ga0334914_006233

Overview

Basic Information

• Taxon OID: 3300034393
• Scaffold ID: Ga0334914_006233
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 10HMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1239
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070770	Metagenome	122	N
F104098	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334914_006233_270_536	F070770	GGAGG	MAKKRAGGKSAPEAWIGRDVVIGVGASGARVSGELREVSDRGIVLHYGAEQHGRDPGHVFYPWSNVQAIQLPDEEQPADEEQPSGSGE
Ga0334914_006233_663_890	F104098	AGGAGG	MQTMHWYNPVTKEEEDVPAPMNDEQAIGMLSGHPDSDRFIEEYRRLSARHPDPVEALTLTGETFYLEHRRGQPPG