Scaffold Ga0334931_000059

Overview

Basic Information

• Taxon OID: 3300034377
• Scaffold ID: Ga0334931_000059
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84132
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033742	Metagenome	176	Y
F079676	Metagenome / Metatranscriptome	115	Y
F081092	Metagenome / Metatranscriptome	114	Y
F091480	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334931_000059_51432_51677	F033742	GGAGG	MYIYTIHVMPGQKAKFEGDPSVKYRVKRVNDSIAVAKKGRSEIIRENLEYEEAVALVNGFNNMEGKSQGFREEAARQKNGS
Ga0334931_000059_53323_53565	F091480	AGG	MRDLHIYVEPSGSGARGERAAFYSRRADGPYYRWLYAEVPGCWHYSRVSLDRLTLRMLCVAPWDALPAALRSRLGEHYLE
Ga0334931_000059_54054_54215	F081092	GGCGG	VSGYDDFVERLQAALADDGGREDFLDYLQGLTREGRAEILAEADRLEAEAQVA
Ga0334931_000059_54412_54633	F079676	GGAG	MLSETAEPGAAIKAGDLVRALDGAYKGRVGTALRVVTSSDEGRTSRSILVSFPAGGADYLDVGALEKAETSDE